Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000204.1 Hibiscus syriacus cultivar Beakdansim tig00000364_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78212

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
722--774
22
2.3
23
78
18
58
28
5
0
66
1.15
792--886
4
22.2
4
76
19
54
20
1
3
75
0.99
808--881
5
15.4
5
80
10
75
18
1
4
75
1.03
1989--2089
24
4.2
24
84
5
107
34
17
18
28
1.94
2037--2166
67
1.9
68
80
1
154
45
18
13
23
1.84
2178--2289
30
3.7
30
74
11
113
56
19
8
15
1.65
3694--3737
18
2.4
18
92
0
70
25
22
9
43
1.82
3984--4078
21
4.8
20
81
12
92
28
31
18
21
1.97
7444--7649
83
2.5
81
85
4
252
28
17
20
33
1.95
10848--11155
43
7.2
43
83
2
329
24
22
20
32
1.98
13227--13288
27
2.5
24
80
12
65
61
3
0
35
1.12
13344--13379
18
2.1
17
89
5
54
44
8
0
47
1.33
14422--14470
3
17.3
3
75
12
50
65
0
0
34
0.93
14403--14460
19
2.9
19
80
10
62
63
0
0
36
0.94
18997--19050
26
2.1
26
96
0
99
37
22
12
27
1.91
27430--27482
21
2.5
21
90
0
79
43
20
20
15
1.88
29263--29309
2
24.5
2
91
8
80
53
0
0
46
1.00
34352--35287
145
6.4
145
73
10
520
34
11
15
38
1.84
34913--35287
138
2.6
145
80
8
391
34
12
14
37
1.85
35851--35905
24
2.3
23
78
9
58
25
1
12
60
1.43
39098--39130
14
2.4
14
100
0
66
36
42
9
12
1.74
43407--43458
20
2.6
19
79
8
59
65
1
0
32
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43672--43737
14
4.7
13
76
12
60
63
0
3
33
1.10
45803--45890
44
2.0
42
95
4
158
32
21
9
36
1.85
55402--55434
16
2.1
16
100
0
66
63
0
12
24
1.28
57196--57260
23
3.0
20
76
14
58
49
4
3
43
1.39
57793--58996
167
7.2
167
86
2
1401
23
18
23
33
1.97
57793--59002
84
14.4
84
85
2
1446
23
18
23
34
1.97
57871--59002
419
2.7
417
88
1
1638
23
18
23
34
1.97
59797--60059
95
2.7
95
82
3
294
30
15
15
37
1.90
64445--64477
16
2.2
16
89
10
52
6
0
9
84
0.76
64889--64953
23
2.8
24
79
9
64
47
6
3
43
1.43
67200--67296
37
2.6
37
86
0
140
41
16
11
30
1.84
68235--68295
2
30.5
2
100
0
122
49
0
0
50
1.00
68448--68520
2
36.5
2
100
0
146
49
0
0
50
1.00
68606--68708
21
4.8
20
74
18
82
17
2
4
74
1.11
68665--68725
26
2.2
28
82
8
72
16
4
1
77
1.03
73188--73242
13
4.2
13
82
13
60
83
5
9
1
0.86
73183--73243
23
2.5
24
81
10
70
81
6
9
1
0.92
73180--73242
14
4.5
13
77
15
63
82
6
9
1
0.90
73850--73916
22
3.0
22
97
0
125
38
26
13
20
1.90
74804--76210
106
13.3
106
90
1
2089
34
24
17
23
1.96
77632--77673
16
2.5
17
88
3
59
30
0
0
69
0.89
77692--77731
12
3.6
11
87
9
55
25
5
5
65
1.34

Tables:   1

The End!