Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002040.1 Hibiscus syriacus cultivar Beakdansim tig00004161_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75171

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1525--1582
20
2.6
23
86
10
77
31
22
20
25
1.98
2620--2724
30
3.5
30
77
2
86
20
20
26
32
1.97
2667--2727
29
2.1
30
87
3
88
19
19
26
34
1.96
4589--4677
32
2.8
32
87
0
133
25
14
19
40
1.89
5855--5928
21
3.6
21
83
3
87
27
20
20
32
1.97
6578--6616
17
2.1
20
86
13
57
61
0
25
12
1.31
11317--11342
1
26.0
1
100
0
52
0
0
100
0
0.00
16466--16524
29
2.0
29
93
0
100
22
18
6
52
1.68
18713--18783
8
7.9
9
78
17
51
77
1
2
18
0.97
18712--18756
10
4.3
10
86
8
63
84
2
0
13
0.72
18712--18771
19
3.2
19
79
6
59
78
1
3
16
0.97
18712--18756
22
2.2
20
88
11
65
84
2
0
13
0.72
19845--19907
20
3.3
18
76
24
58
69
1
0
28
0.97
19841--19911
28
2.6
27
73
18
67
69
1
0
29
0.98
19915--19958
22
1.9
22
90
9
70
61
2
0
36
1.09
19951--20008
25
2.3
25
90
0
89
43
6
3
46
1.47
19972--20268
37
8.1
37
88
6
410
44
5
4
45
1.47
24292--24334
16
2.7
16
92
0
68
9
9
20
60
1.55
24400--24430
16
1.9
16
100
0
62
6
12
22
58
1.58
25939--25971
16
2.1
16
94
0
57
54
27
12
6
1.60
26036--26090
10
5.1
10
75
16
56
61
18
10
9
1.54
26042--26088
24
2.0
24
91
0
76
61
17
12
8
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26728--26830
15
6.3
15
73
16
73
70
1
11
15
1.24
26924--26958
14
2.6
14
90
4
54
77
0
5
17
0.96
27016--27100
12
6.8
12
73
18
57
71
1
4
22
1.11
27163--27213
10
5.3
9
76
21
50
64
1
0
33
1.05
27166--27216
3
15.7
3
80
15
57
64
1
0
33
1.05
27166--27216
13
3.9
13
87
7
68
64
1
0
33
1.05
27730--27808
2
39.5
2
100
0
158
50
0
0
49
1.00
28184--28252
23
3.0
23
82
0
93
34
26
21
17
1.95
28479--28537
30
2.0
29
83
3
73
33
22
8
35
1.84
32458--32569
43
2.6
44
79
8
124
25
16
25
33
1.96
48488--48514
3
9.0
3
100
0
54
0
0
33
66
0.92
48766--48857
14
6.1
15
73
16
66
73
1
7
17
1.11
48765--48906
15
9.9
14
69
19
71
75
0
9
14
1.08
48794--48873
4
19.8
4
73
16
67
77
0
5
17
0.94
48784--48889
19
5.4
19
75
12
72
77
0
6
16
0.97
48759--48904
50
2.9
49
78
10
136
75
0
8
15
1.08
48792--48874
7
11.4
7
71
19
55
78
0
4
16
0.92
48933--48967
3
11.7
3
100
0
70
65
0
0
34
0.93
48986--49029
14
3.2
13
79
20
54
77
0
9
13
0.99
49015--49055
17
2.4
18
80
12
50
68
2
7
21
1.26
49001--49103
44
2.5
41
78
12
102
68
1
7
21
1.24
49001--49122
41
2.9
41
75
19
117
68
1
7
22
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49190--49248
26
2.1
27
81
9
75
62
1
1
33
1.15
49236--49294
10
5.5
11
79
18
63
64
6
0
28
1.19
49240--49288
3
15.3
3
79
12
53
65
4
0
30
1.11
49236--49294
22
2.8
21
87
10
84
64
6
0
28
1.19
50137--50178
21
2.0
22
85
4
59
38
19
26
16
1.92
54036--54062
14
1.9
14
100
0
54
14
22
14
48
1.81
68764--68834
30
2.4
30
90
4
108
21
15
7
56
1.63
74834--74960
61
2.1
60
79
8
132
34
9
15
40
1.80

Tables:   1

The End!