Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002061.1 Hibiscus syriacus cultivar Beakdansim tig00004198_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  345124

Tables:   1   2   

This is table  2  of  2  ( 160 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
271034--271212
49
3.6
50
82
3
207
24
11
14
49
1.76
274448--274485
19
2.1
19
90
5
60
31
10
7
50
1.66
274501--274534
17
2.1
16
88
5
50
50
26
0
23
1.50
276706--276744
20
2.0
20
90
5
62
33
0
0
66
0.92
277385--277467
36
2.4
34
77
18
98
48
2
1
48
1.22
278194--278259
23
2.9
23
86
4
89
28
4
13
53
1.60
280776--280811
16
2.4
15
90
9
56
44
0
5
50
1.25
281836--281876
18
2.3
18
87
8
57
39
29
12
19
1.88
289134--289272
69
2.0
69
91
2
226
35
19
20
23
1.95
291817--291870
26
2.1
26
85
0
72
55
3
5
35
1.41
292539--292582
20
2.4
18
82
14
54
61
0
0
38
0.96
293449--293509
27
2.4
26
76
15
65
31
4
3
60
1.34
296829--296857
3
10.0
3
92
7
51
65
0
0
34
0.93
297138--297346
81
2.6
80
83
8
250
22
16
33
27
1.96
297238--297410
80
2.2
79
82
6
197
23
15
33
27
1.95
297502--297671
64
2.6
67
78
9
210
39
13
22
24
1.90
297639--297691
21
2.6
21
93
3
90
47
13
22
16
1.82
298144--298667
260
2.0
264
95
3
961
31
18
14
35
1.91
299309--299353
10
4.7
10
83
5
58
0
15
4
80
0.87
299309--299357
20
2.5
20
93
6
84
0
18
4
77
0.92
299323--299368
20
2.2
20
84
7
56
2
17
10
69
1.27
303263--303293
2
15.5
2
100
0
62
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
304478--304524
19
2.5
19
100
0
94
25
29
17
27
1.97
310325--310386
27
2.3
27
86
10
83
50
6
3
40
1.44
314800--314846
22
2.1
23
84
4
60
46
2
2
48
1.25
320733--320773
22
2.0
21
90
9
66
51
9
9
29
1.67
321813--321905
47
2.0
47
97
2
179
27
12
17
41
1.86
324256--324360
2
52.5
2
100
0
210
50
0
0
49
1.00
324550--324606
30
1.9
30
85
7
80
33
19
19
28
1.96
325157--325195
20
2.0
20
89
0
60
30
33
15
20
1.94
328665--328689
13
1.9
13
100
0
50
44
0
16
40
1.47
331065--331144
24
3.5
24
69
20
73
22
25
22
30
1.99
332691--332729
18
2.4
16
87
12
53
2
51
12
33
1.54
333829--333867
20
2.0
20
89
0
60
30
33
15
20
1.94
333887--333977
46
2.0
46
93
2
157
27
26
19
26
1.99
338521--338556
8
4.6
8
89
6
56
77
0
8
13
0.98
338521--338555
15
2.3
15
95
0
61
77
0
8
14
0.99
339017--339083
28
2.4
27
82
7
82
25
10
7
56
1.59
341836--341916
30
2.7
30
73
7
92
50
16
17
16
1.78
344678--344712
2
17.5
2
100
0
70
51
0
0
48
1.00

Tables:   1   2

The End!