genome.fa.s2062.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002062.1 Hibiscus syriacus cultivar Beakdansim tig00004205_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  357801

Tables:   1   2   

This is table  2  of  2  ( 176 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
203763--203827	3	21.3	3	87	9	96	0	66	0	33	0.92
204145--204328	94	2.0	92	95	4	334	37	16	10	35	1.83
225846--225908	31	2.0	31	87	0	90	39	15	15	28	1.89
227843--227915	20	3.7	20	96	0	128	28	15	28	27	1.96
230819--230889	34	2.1	34	100	0	142	49	11	2	36	1.53
243142--243419	116	2.3	117	87	6	398	37	19	13	29	1.90
245084--245125	2	22.0	2	90	9	70	50	0	0	50	1.00
245084--245125	11	3.7	12	90	9	70	50	0	0	50	1.00
245803--246007	103	2.0	103	97	0	383	21	22	21	34	1.97
247006--247139	3	42.7	3	71	20	71	32	4	4	58	1.38
247021--247063	17	2.6	16	82	13	52	27	6	6	58	1.50
247053--247137	16	5.2	16	72	20	61	32	2	4	60	1.30
254295--254320	2	13.0	2	100	0	52	50	0	0	50	1.00
256297--256330	15	2.2	16	89	5	52	38	0	5	55	1.24
258841--258895	28	2.0	27	86	10	76	61	0	10	27	1.29
266241--266299	27	2.1	28	82	14	70	42	0	6	50	1.28
266252--266305	21	2.4	23	77	17	60	50	0	3	46	1.19
268961--268985	13	1.9	13	100	0	50	24	16	16	44	1.86
272639--272698	29	2.0	31	90	6	97	35	6	16	41	1.75
272763--272812	19	2.6	19	93	0	73	44	10	10	36	1.72
272776--272828	19	2.8	19	91	0	70	41	13	11	33	1.80
272935--272976	21	2.0	21	95	0	75	23	21	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
273005--273044	20	1.9	21	85	10	55	37	37	10	15	1.80
273825--273902	31	2.5	32	79	8	108	57	11	5	25	1.54
277622--277734	59	1.9	60	87	1	165	36	12	14	37	1.83
277954--278060	52	2.1	52	98	0	205	36	11	9	42	1.73
278009--278122	60	1.9	60	87	0	165	39	7	10	42	1.69
278975--279015	21	2.0	20	85	4	55	56	0	7	36	1.27
280494--280536	22	1.9	22	85	4	59	60	2	2	34	1.22
280810--280835	12	2.2	12	100	0	52	23	23	34	19	1.96
285989--286048	26	2.5	23	78	17	77	18	16	20	45	1.86
285993--286043	26	2.0	26	96	0	93	15	19	19	45	1.86
286801--286900	32	3.1	32	86	1	128	36	9	8	47	1.65
286833--287369	140	3.8	139	81	4	591	37	16	7	37	1.78
286963--287023	32	1.9	32	89	0	95	32	11	8	47	1.69
286963--287039	32	2.4	32	82	4	84	33	11	9	45	1.72
287100--287178	32	2.5	32	85	4	97	34	20	6	39	1.78
286844--287371	280	1.9	279	84	3	704	37	16	7	38	1.77
287821--287931	36	3.1	35	81	5	132	21	7	16	54	1.65
292218--292291	37	2.1	36	89	5	114	40	25	9	24	1.85
293850--293883	16	2.1	16	94	0	59	32	8	26	32	1.87
299494--299560	15	4.3	15	66	7	53	58	4	5	31	1.42
308848--308905	29	2.0	29	86	0	80	15	36	27	20	1.93
309029--309105	29	2.7	29	97	0	145	23	27	35	14	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
310159--310335	82	2.2	82	83	3	230	29	19	19	31	1.96
310166--310387	82	2.7	81	79	7	191	31	19	16	31	1.94
314706--314762	22	2.6	22	97	0	105	28	19	28	24	1.98
316520--316544	12	2.1	12	100	0	50	56	0	8	36	1.29
321914--321953	21	1.9	21	94	0	71	32	30	20	17	1.95
322755--322812	20	2.7	20	86	10	71	24	22	24	29	1.99
326190--326217	6	4.7	6	100	0	56	14	17	17	50	1.79
335956--335984	2	14.5	2	100	0	58	51	0	0	48	1.00
338299--338357	29	2.0	29	100	0	118	23	13	13	49	1.78
342986--343044	29	2.0	29	100	0	118	23	13	13	49	1.78
349059--349084	3	8.7	3	100	0	52	0	30	0	69	0.89
353830--354811	3	337.7	3	82	14	1181	0	31	0	68	0.94

Tables:   1   2

The End!