genome.fa.s2086.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002086.1 Hibiscus syriacus cultivar Beakdansim tig00004258_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  473624

Tables:   1   2   3   

This is table  1  of  3  ( 248 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--2599	2	1347.0	2	90	7	4227	0	0	51	48	1.00
9271--9340	20	3.5	20	81	9	65	67	2	0	30	1.05
9286--9341	21	2.7	21	83	8	69	69	3	0	26	1.04
9381--9419	2	19.5	2	94	0	69	46	0	2	51	1.14
9495--9551	25	2.2	26	78	9	62	35	8	8	47	1.66
9730--9793	2	32.0	2	84	12	87	46	1	3	48	1.27
9899--9952	22	2.5	21	88	11	74	31	0	1	66	1.02
10804--10836	12	2.6	13	95	4	59	66	0	0	33	0.92
12585--12647	21	3.0	20	73	17	58	23	4	1	69	1.16
15804--15861	2	32.0	2	77	19	56	44	0	0	55	0.99
17483--17514	16	2.0	17	88	11	50	68	6	0	25	1.12
21107--21205	31	3.2	31	97	0	180	51	11	8	29	1.66
24189--24240	20	2.6	20	90	0	86	26	19	15	38	1.91
28243--28436	32	5.8	32	79	11	219	26	11	17	44	1.82
28223--28443	68	3.2	68	94	0	379	26	11	17	44	1.82
28280--28460	18	10.6	17	64	14	59	24	9	19	45	1.80
28416--28459	18	2.5	18	85	3	63	22	4	20	52	1.65
28808--28930	40	3.1	39	68	13	106	37	15	21	25	1.93
28828--28968	40	3.5	40	72	3	122	34	17	23	24	1.95
28771--28968	80	2.5	80	84	1	254	37	15	22	24	1.93
28833--28996	80	2.1	79	80	4	177	34	16	22	26	1.95
29768--29803	11	2.8	14	76	24	51	36	8	19	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33874--34010	20	6.8	21	70	12	99	32	18	16	31	1.94
33932--34016	41	2.1	41	90	0	134	41	12	17	28	1.87
35351--35398	21	2.3	21	92	0	78	35	8	27	29	1.86
36072--36117	21	2.2	21	88	0	65	17	13	36	32	1.88
36070--36191	63	1.9	63	81	6	149	22	11	33	31	1.90
36137--36229	42	2.2	43	75	5	100	23	9	31	35	1.87
36524--36642	21	5.6	22	80	8	140	20	36	18	24	1.94
36524--36642	42	2.8	42	89	0	175	20	36	18	24	1.94
39639--39695	28	2.0	28	100	0	114	33	21	10	35	1.87
40755--40808	24	2.2	24	93	0	90	40	20	18	20	1.91
40755--40822	24	2.8	24	84	0	64	38	20	17	23	1.93
40934--40967	12	2.8	12	90	0	50	14	0	29	55	1.40
41737--41805	20	3.5	20	73	15	70	33	11	24	30	1.91
41739--41947	40	5.2	40	70	14	137	33	12	24	28	1.92
41836--41888	20	2.7	20	80	14	65	26	11	26	35	1.90
47850--47945	50	1.9	51	85	6	133	25	17	32	25	1.97
48018--48060	10	4.1	11	82	17	56	27	27	0	44	1.55
48100--48140	18	2.3	18	91	4	66	29	4	2	63	1.28
50923--50960	16	2.4	16	100	0	76	26	28	31	13	1.93
51566--51604	2	19.5	2	100	0	78	51	0	0	48	1.00
53522--53596	30	2.5	31	83	10	86	29	8	10	52	1.65
53533--53596	31	2.2	30	83	13	80	31	7	10	50	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60102--60195	47	2.0	47	100	0	188	44	8	8	38	1.65
63962--64055	2	49.5	2	83	14	119	45	0	2	52	1.12
64133--64184	24	2.3	22	83	6	68	26	1	1	69	1.10
64137--64189	19	2.7	18	73	21	52	30	1	1	66	1.13
74632--74727	49	1.9	50	87	2	140	47	14	22	14	1.81
75462--75921	105	4.4	105	97	0	875	33	24	18	23	1.97
77631--77679	2	24.5	2	95	0	89	48	2	0	48	1.12
77749--77789	17	2.4	18	80	12	50	17	14	0	68	1.22
77780--77829	21	2.5	19	81	18	57	26	4	2	68	1.18
77790--77832	22	2.0	22	86	9	61	27	4	2	65	1.25
77909--77946	2	19.0	2	100	0	76	50	0	0	50	1.00
83835--83862	14	2.0	14	100	0	56	14	21	14	50	1.78
85620--85720	51	2.0	51	96	0	184	31	21	11	34	1.90
87948--87975	14	2.0	14	100	0	56	14	21	14	50	1.78
92129--92208	38	2.1	38	83	4	99	30	12	11	46	1.77
95457--95616	4	40.0	4	100	0	320	25	0	25	50	1.50
99725--99807	43	1.9	43	87	4	123	43	25	12	19	1.85
102503--102637	46	2.9	46	83	3	164	27	11	22	37	1.89
107061--107288	125	1.8	125	81	3	289	32	15	26	25	1.95
108478--108579	37	2.8	37	82	7	109	37	21	19	21	1.95
108979--109600	54	11.6	54	94	0	1005	36	17	24	21	1.95
109592--109736	51	2.8	52	85	4	175	26	17	27	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109592--109785	106	1.8	106	85	4	275	27	17	26	28	1.98
109592--109785	55	3.6	55	81	6	227	27	17	26	28	1.98
110331--110413	43	1.9	43	87	4	123	43	25	12	19	1.85
114617--114937	55	5.9	55	80	6	257	30	22	17	29	1.96
116211--116296	45	1.9	45	83	4	111	15	30	16	38	1.89
116302--116346	24	1.9	24	86	13	67	8	20	0	71	1.12
116374--116490	9	13.6	8	77	18	94	11	15	0	73	1.09
116300--116495	33	6.1	31	73	15	134	10	17	0	71	1.14
116303--116496	64	3.1	62	79	12	159	10	18	0	70	1.15
116384--116473	47	2.0	45	91	8	146	13	13	0	73	1.10
116444--116508	17	3.8	18	84	13	59	4	16	0	78	0.91
116408--116521	27	4.1	29	77	15	89	8	17	0	73	1.07
116390--116510	9	13.4	9	70	13	52	9	15	0	75	1.04
126164--126297	45	2.9	45	89	2	196	36	21	12	29	1.90
133115--133182	22	3.1	22	77	10	68	14	30	4	50	1.63
134423--134453	15	2.1	15	100	0	62	45	6	6	41	1.55
152776--152852	31	2.5	31	82	0	91	41	12	14	31	1.83
154252--154312	31	2.0	31	86	0	86	29	9	16	44	1.80
155299--155385	33	2.6	33	88	3	129	13	10	34	41	1.79
155963--156045	18	4.7	18	78	8	82	28	22	4	43	1.74
156355--156399	21	2.1	21	83	0	54	17	24	17	40	1.91
156401--156532	21	6.4	21	90	4	180	40	17	21	19	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
157166--157228	20	3.2	20	82	8	83	14	23	14	47	1.80
158923--159298	94	4.1	93	93	2	580	22	11	18	48	1.80
159387--159477	19	5.0	19	79	15	102	49	18	21	9	1.77
159387--159510	33	3.5	35	84	8	130	49	21	20	8	1.76
159387--159516	20	7.3	19	76	19	109	50	22	19	8	1.74
159431--159495	14	4.3	14	76	17	67	49	23	20	7	1.74
159413--159515	33	3.1	33	91	2	163	50	25	17	6	1.70
159540--159629	19	4.9	19	75	15	91	11	21	21	46	1.81
161518--161553	14	2.6	14	95	0	63	33	0	22	44	1.53
161663--161758	19	5.6	19	71	25	79	46	22	20	9	1.79
161663--161753	33	2.8	33	91	3	139	46	23	20	9	1.80
161692--161769	19	4.4	19	80	18	96	46	25	16	11	1.81
161764--161914	19	8.7	19	68	21	98	13	24	17	44	1.85
161770--161894	33	3.8	33	95	0	214	12	24	16	46	1.82
161789--161876	14	5.6	14	70	23	59	11	25	18	45	1.82
161888--161960	20	3.6	20	71	10	67	24	19	23	32	1.97
165334--165409	21	3.7	21	79	8	75	38	15	25	21	1.92
169010--169052	20	2.2	20	84	8	54	37	9	30	23	1.86
172064--172098	18	1.9	18	88	0	52	51	0	0	48	1.00
177075--177195	36	3.3	36	82	8	154	38	17	14	29	1.89
178176--178389	107	2.0	107	99	0	419	40	22	6	30	1.80
179987--180027	3	13.7	3	100	0	82	0	65	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
182269--182424	31	5.0	31	93	1	242	39	23	17	19	1.92
184402--184427	2	13.0	2	100	0	52	50	0	0	50	1.00
188376--188410	11	3.1	11	88	8	52	40	0	0	60	0.97
188372--188403	12	2.8	12	86	13	50	37	0	0	62	0.95
188913--188950	18	2.2	17	90	4	58	44	2	7	44	1.47
190017--190055	19	2.1	19	100	0	78	48	25	10	15	1.76
190017--190066	19	2.6	19	90	0	64	48	22	10	20	1.79
201765--201795	6	5.2	6	96	0	53	3	16	32	48	1.62
202528--202579	2	26.0	2	100	0	104	50	0	0	50	1.00
206498--206544	18	2.6	19	83	10	62	63	0	8	27	1.23

Tables:   1   2   3