genome.fa.s2086.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002086.1 Hibiscus syriacus cultivar Beakdansim tig00004258_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  473624

Tables:   1   2   3   

This is table  2  of  3  ( 248 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
208156--208206	22	2.4	21	84	12	68	7	11	3	76	1.13
212050--212103	18	2.9	18	81	8	56	66	1	9	22	1.30
214892--214919	2	14.0	2	100	0	56	50	0	0	50	1.00
219418--219571	13	12.5	12	67	22	54	42	0	1	55	1.11
219449--219543	24	3.5	24	71	23	82	45	0	1	53	1.07
219419--219571	58	2.5	63	82	14	219	42	0	1	55	1.11
219990--220051	21	3.3	21	62	29	57	43	0	11	45	1.40
219995--220051	18	3.2	18	76	14	73	42	0	12	45	1.41
220004--220055	17	3.0	17	73	15	61	40	0	15	44	1.46
219986--220055	35	2.0	35	100	0	140	40	0	14	45	1.45
220261--220320	31	1.9	31	96	0	111	43	8	6	41	1.61
255613--255678	21	3.1	21	82	0	78	19	30	21	28	1.98
256417--256545	63	2.0	64	93	1	224	37	23	0	38	1.60
256438--256560	23	5.6	23	71	13	107	35	20	0	43	1.58
256501--256563	23	2.7	23	95	0	108	33	17	0	49	1.47
256707--257371	138	4.8	138	90	1	1008	33	21	21	23	1.97
256608--257371	277	2.8	274	90	2	1175	33	22	21	23	1.98
260528--260569	21	2.0	21	85	0	57	50	0	0	50	1.00
268694--268719	2	13.0	2	100	0	52	50	0	0	50	1.00
269794--269906	29	3.9	29	91	0	100	51	5	6	37	1.50
269842--269895	17	3.5	17	76	23	73	57	0	3	38	1.17
269847--269900	14	3.8	14	79	13	65	59	0	3	37	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
269859--269907	12	3.7	12	76	23	53	57	0	2	40	1.10
269842--269903	17	3.9	16	76	23	69	59	0	3	37	1.13
269837--269908	29	2.5	29	100	0	144	56	0	2	40	1.13
276027--276085	18	3.3	18	80	0	64	37	20	1	40	1.63
276027--276085	6	9.8	6	78	7	57	37	20	1	40	1.63
276425--276573	31	4.8	31	83	5	185	37	21	15	25	1.93
276423--276572	62	2.4	63	86	4	223	37	21	15	26	1.93
277928--277966	7	5.7	7	96	3	71	58	0	41	0	0.98
280137--280172	3	12.3	3	88	5	56	61	0	0	38	0.96
282573--282667	50	1.9	50	84	0	127	40	13	25	21	1.90
291699--292038	170	2.0	170	88	0	509	32	17	20	29	1.96
296183--296275	32	2.9	32	100	0	186	34	21	19	24	1.96
296347--296385	21	1.9	21	89	5	62	28	20	5	46	1.72
299341--299383	20	2.2	20	86	0	59	18	4	18	58	1.56
303127--303170	21	2.1	21	91	0	70	25	20	25	29	1.99
303828--303952	32	3.9	32	89	0	196	35	22	16	26	1.94
303826--303954	64	2.0	64	93	0	222	34	22	15	27	1.94
304236--304283	15	3.3	15	77	14	55	31	16	2	50	1.57
304688--304731	20	2.2	20	91	0	70	29	34	9	27	1.87
308068--308132	29	2.2	29	88	0	94	20	35	29	15	1.93
308208--308281	25	3.2	25	64	25	70	18	17	41	21	1.90
308218--308292	20	3.5	20	67	22	62	18	18	40	22	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
308210--308299	45	2.0	45	100	0	180	20	20	37	22	1.94
308784--308827	21	2.1	21	91	0	70	29	0	15	54	1.42
308804--308866	28	2.2	30	91	5	103	31	0	11	57	1.34
309365--309405	21	1.9	22	95	5	75	36	0	9	53	1.34
309372--309416	21	2.2	21	84	4	56	37	0	6	55	1.26
309677--309735	26	2.3	25	75	18	66	47	8	3	40	1.51
310954--310984	15	2.1	14	94	5	53	54	6	0	38	1.26
310959--311005	16	3.0	16	84	9	53	59	10	0	29	1.31
311046--311127	34	2.5	34	83	13	93	48	13	0	37	1.42
311167--311299	45	3.0	45	80	14	136	48	12	0	39	1.40
311239--311327	41	2.2	40	78	8	90	46	10	1	42	1.45
311401--311443	16	2.5	18	77	7	54	62	2	0	34	1.08
311462--311514	21	2.5	21	96	0	97	1	35	0	62	1.06
311485--311516	17	1.9	16	93	6	55	0	37	0	62	0.95
311519--311564	23	2.0	23	100	0	92	8	39	4	47	1.54
311676--311728	27	2.0	27	100	0	106	26	20	22	30	1.98
311803--311882	29	2.8	29	92	3	126	21	32	31	15	1.94
311913--311977	11	6.1	11	69	25	50	13	24	26	35	1.93
311892--311975	42	2.0	42	100	0	168	11	28	26	33	1.92
311971--312005	13	2.8	13	95	4	63	14	37	17	31	1.89
322987--323026	20	2.0	20	90	5	62	50	2	15	32	1.57
328557--328620	23	2.8	22	85	4	83	26	26	26	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
328636--328953	103	3.1	103	96	0	591	36	24	12	25	1.91
329417--329469	20	2.7	20	100	0	106	30	32	16	20	1.95
329437--329597	64	2.5	62	83	10	182	27	20	18	33	1.96
335653--335956	103	3.0	103	96	0	563	35	24	13	25	1.92
336404--336531	64	2.0	67	89	7	201	28	18	18	34	1.95
336416--336576	64	2.5	63	83	5	198	27	20	17	34	1.95
351594--351647	19	2.8	20	73	15	60	35	0	0	64	0.94
351607--352412	403	2.0	403	97	0	1531	28	13	20	37	1.91
353848--353901	23	2.3	23	100	0	108	22	20	27	29	1.98
356397--356834	216	2.0	215	96	1	815	31	19	16	32	1.94
356819--356885	21	3.2	21	100	0	134	34	26	10	28	1.90
361379--361816	216	2.0	215	97	1	842	31	20	16	31	1.94
361801--361867	21	3.2	21	97	0	125	35	25	10	28	1.89
365237--365302	2	33.0	2	100	0	132	50	0	0	50	1.00
365599--365667	23	3.0	23	82	4	86	31	24	24	18	1.98
366424--366461	2	19.0	2	100	0	76	50	0	0	50	1.00
367207--367259	24	2.2	23	78	15	54	28	24	15	32	1.95
369794--369849	27	2.0	28	82	3	69	44	8	1	44	1.45
371014--371060	24	2.0	24	95	0	85	27	17	17	38	1.91
379389--379422	14	2.4	14	95	0	59	58	17	14	8	1.61
380187--380262	36	2.1	36	85	7	100	47	1	3	47	1.29
380689--380718	14	2.2	13	94	5	51	33	10	0	56	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
382183--382222	16	2.4	17	83	8	55	17	22	10	50	1.76
399819--399934	36	3.3	36	89	3	182	17	27	23	31	1.97
404627--404690	31	2.1	31	96	0	119	23	25	15	35	1.94
405060--405096	8	4.9	8	90	6	51	51	0	0	48	1.00
405050--405096	15	3.0	15	76	17	51	48	2	2	46	1.25
406084--406113	15	1.9	16	93	6	53	20	6	20	53	1.67
414567--414632	28	2.4	28	92	5	107	34	0	21	43	1.53
418503--418565	16	3.9	15	81	10	63	38	1	3	57	1.24
418495--418572	14	5.9	13	73	22	65	38	2	5	53	1.37
418532--418572	2	21.0	2	85	5	57	43	0	4	51	1.23
418525--418565	12	3.4	12	86	6	57	41	0	4	53	1.22
418885--418920	17	2.1	18	89	5	56	13	0	8	77	0.98
418888--418958	16	4.1	17	70	22	58	16	2	2	77	1.01
418918--418981	25	2.6	25	73	11	69	21	6	1	70	1.18
418891--418958	9	7.7	9	72	9	50	16	2	2	77	1.00
429969--430003	13	2.7	13	90	0	61	82	0	0	17	0.66
429966--430006	16	2.6	15	92	7	64	85	0	0	14	0.60
430192--430859	105	6.4	105	95	1	1207	33	25	18	23	1.97
430192--430859	209	3.2	210	95	1	1207	33	25	18	23	1.97
432476--432509	2	17.0	2	87	0	50	44	0	5	50	1.26
432469--432509	10	4.0	10	90	3	64	41	0	7	51	1.30
432771--432899	4	31.8	4	72	14	70	20	3	2	73	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
432771--432907	9	15.1	9	69	18	79	20	2	2	74	1.05
432865--432929	26	2.5	26	80	5	78	24	3	1	70	1.10
432937--432961	7	3.6	7	100	0	50	24	0	0	76	0.80
439147--439175	15	1.9	15	100	0	58	34	0	10	55	1.34
439588--439821	71	3.2	72	83	4	258	28	18	14	37	1.91
440158--440413	136	1.9	134	84	1	341	35	16	18	28	1.93
440379--440524	59	2.5	59	82	2	177	25	25	17	31	1.97
442069--442114	14	3.2	14	81	6	56	28	15	6	50	1.69
443841--443903	28	2.2	28	85	0	81	34	14	19	31	1.91
447931--447963	13	2.5	13	100	0	66	45	39	0	15	1.46

Tables:   1   2   3