genome.fa.s2105.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002105.1 Hibiscus syriacus cultivar Beakdansim tig00004307_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85110

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
740--783	22	2.0	22	95	4	81	43	22	25	9	1.82
4050--4137	21	4.0	21	82	4	95	26	30	26	17	1.97
4050--4132	23	3.8	22	84	4	96	25	32	24	18	1.97
9767--9815	3	16.7	3	95	4	91	34	0	0	65	0.93
12359--12426	33	2.1	33	86	5	93	11	33	27	26	1.91
24067--24103	20	1.9	19	89	10	58	45	13	21	18	1.84
24376--24406	15	2.1	15	93	0	53	54	0	0	45	0.99
27739--27771	16	2.1	16	88	5	50	48	0	6	45	1.27
27858--27904	23	1.9	25	83	12	62	59	0	0	40	0.97
29290--29330	3	14.0	3	80	14	50	63	0	0	36	0.95
29459--30553	76	14.4	76	98	0	2048	36	21	20	21	1.95
30944--31480	113	4.8	112	88	5	737	29	19	13	37	1.90
31314--31358	23	1.9	23	82	13	56	15	26	6	51	1.68
30957--31481	225	2.3	226	90	2	808	28	19	13	38	1.90
30957--31518	112	5.0	111	87	6	717	28	19	14	37	1.91
31918--31972	22	2.5	22	90	0	92	38	14	12	34	1.84
34509--34681	83	2.1	83	94	2	303	36	20	15	28	1.92
36949--36986	20	1.9	20	84	10	51	0	5	7	86	0.69
41626--41676	18	2.9	17	75	16	50	72	1	0	25	0.95
42216--42248	16	2.1	16	88	5	50	48	0	6	45	1.27
42335--42381	23	1.9	25	83	12	62	59	0	0	40	0.97
43809--43849	3	14.0	3	80	14	50	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53922--54142	64	3.5	64	82	7	229	34	19	18	27	1.95
54583--54615	14	2.4	14	100	0	66	48	6	21	24	1.72
54889--55106	103	2.1	103	95	0	400	26	13	23	36	1.92
55113--55232	47	2.6	47	93	1	197	25	23	21	30	1.99
55113--55236	23	5.3	23	76	2	122	25	22	20	30	1.98
61477--61545	23	3.0	23	75	8	68	21	21	24	31	1.98
69078--69109	2	16.0	2	93	0	55	50	3	0	46	1.17
69389--69436	23	2.1	23	88	0	69	35	12	18	33	1.89
69853--69924	23	3.2	22	88	4	99	38	22	4	34	1.73
70285--70347	23	2.7	23	92	0	99	38	20	4	36	1.74
69503--70639	426	2.7	427	96	2	2101	39	12	7	40	1.72
70746--70831	39	2.2	38	93	2	145	17	13	20	47	1.82
71090--71126	18	2.1	18	89	0	56	51	10	5	32	1.60
71513--71563	25	2.0	25	88	0	75	39	17	7	35	1.79
71829--71880	23	2.3	22	90	6	77	44	19	1	34	1.62
71839--71901	23	2.7	23	90	0	90	38	19	6	36	1.77
72241--72306	25	2.6	25	80	0	87	42	13	9	34	1.76
74773--75479	183	3.9	183	95	0	1265	33	16	14	35	1.89
74773--75454	364	1.9	366	96	0	1269	33	16	14	35	1.90
76902--76955	3	18.0	3	84	0	72	25	33	3	37	1.74
76902--76959	12	4.8	12	93	0	80	25	32	5	36	1.78
76902--76970	18	3.8	18	86	0	75	23	33	5	37	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76915--76967	12	4.4	12	92	0	70	22	33	7	35	1.83
78426--79766	195	6.9	198	95	3	2419	31	16	15	36	1.90
79883--79931	19	2.6	19	93	0	80	57	10	2	30	1.43
81710--81773	32	2.0	32	87	0	92	25	46	0	28	1.53
84072--84116	19	2.3	19	78	14	56	20	17	11	51	1.75
84237--84279	18	2.3	18	85	14	61	18	18	11	51	1.76

Tables:   1

The End!