genome.fa.s2106.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002106.1 Hibiscus syriacus cultivar Beakdansim tig00004309_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106780

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17844--17935	20	4.6	20	82	5	114	28	27	19	25	1.99
18101--18151	22	2.3	22	93	0	84	23	45	11	19	1.83
18537--18606	20	3.5	20	98	0	131	12	17	25	44	1.84
20020--20073	27	2.0	27	100	0	108	14	44	11	29	1.80
20024--20086	27	2.3	27	91	0	99	19	44	7	28	1.78
20646--20708	19	3.3	19	80	6	74	12	14	25	47	1.79
20710--20761	20	2.7	20	90	3	79	17	23	23	36	1.95
20747--20789	20	2.2	20	87	8	61	13	9	23	53	1.69
21297--21390	42	2.2	42	84	3	118	23	37	19	20	1.94
21321--21390	21	3.3	21	72	5	70	22	37	20	20	1.95
22776--22812	14	2.6	14	100	0	74	29	0	21	48	1.50
22812--22920	36	3.3	35	70	21	117	29	2	14	53	1.55
22790--22943	63	2.4	63	94	4	263	29	1	16	51	1.56
22995--23087	20	4.7	20	87	2	116	44	23	18	13	1.86
23010--23088	20	4.0	20	93	0	122	45	21	20	12	1.84
22995--23089	40	2.4	40	89	0	145	43	23	18	14	1.87
23131--23267	20	6.8	20	86	0	184	29	19	19	31	1.97
23238--23660	140	3.0	140	96	0	774	43	14	12	28	1.83
25788--25814	14	1.9	14	100	0	54	7	18	29	44	1.77
26026--26072	24	2.0	24	95	0	85	34	17	21	27	1.95
26886--26996	20	5.4	20	73	12	100	21	20	28	28	1.98
26886--27035	41	3.7	41	94	0	255	22	20	26	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26903--27018	21	5.6	21	75	11	114	22	18	25	33	1.97
27052--27097	19	2.4	19	85	3	56	21	17	30	30	1.96
27063--27099	19	1.9	19	94	0	65	21	16	29	32	1.95
27673--27706	14	2.3	15	95	5	61	47	0	2	50	1.16
34757--34830	20	3.7	20	88	0	103	48	17	12	21	1.79
34824--34882	20	3.0	20	89	0	82	28	8	20	42	1.81
35169--35209	18	2.3	18	91	0	64	19	2	24	53	1.57
35571--35600	12	2.5	12	100	0	60	46	16	0	36	1.47
36639--36683	20	2.2	20	88	0	63	31	15	20	33	1.93
45168--45210	20	2.2	20	86	0	59	32	16	20	30	1.95
46354--46396	21	2.0	21	86	0	59	30	27	25	16	1.97
46376--46510	65	2.1	65	84	5	175	31	25	27	15	1.96
46828--46897	29	2.4	29	92	0	113	38	10	12	38	1.77
46913--46972	30	2.0	31	93	3	104	36	6	25	31	1.82
47192--47258	22	3.0	22	100	0	134	19	26	26	26	1.99
53289--53331	21	2.0	21	86	0	59	30	27	25	16	1.97
53311--53461	67	2.3	67	83	6	182	29	27	27	15	1.96
53761--53830	29	2.4	29	92	0	113	38	10	12	38	1.77
53845--53904	30	2.0	31	93	3	104	36	6	25	31	1.82
54124--54190	22	3.0	22	100	0	134	19	26	26	26	1.99
60224--60266	21	2.0	21	86	0	59	30	27	25	16	1.97
60246--60396	67	2.3	67	83	6	182	29	27	27	15	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60699--60768	29	2.4	29	92	0	113	38	10	12	38	1.77
60784--60843	30	2.0	31	93	3	104	36	6	25	31	1.82
61063--61129	22	3.0	22	100	0	134	19	26	26	26	1.99
63973--64026	24	2.2	24	86	0	72	38	18	20	22	1.93
64152--64185	12	2.8	12	90	0	50	14	0	29	55	1.40
79934--80102	60	2.8	60	81	2	207	32	10	16	40	1.82
81168--81241	23	3.2	23	84	0	67	20	24	21	33	1.97
81191--81251	23	2.7	23	86	0	86	18	24	19	37	1.94
82310--82347	16	2.3	17	95	4	69	47	2	0	50	1.15
83033--83133	34	3.0	34	83	0	130	45	19	13	20	1.85
83094--83151	23	2.5	23	85	0	71	44	18	13	22	1.85
83100--83157	23	2.5	23	82	0	71	46	20	12	20	1.82
83218--83250	17	1.9	17	100	0	66	54	24	9	12	1.66
87126--87179	21	2.6	21	82	5	65	29	0	25	44	1.54
87166--87227	7	8.9	7	84	7	54	24	0	32	43	1.54
87167--87262	14	6.9	14	72	13	72	25	0	29	45	1.53
87169--87269	21	4.8	21	73	4	69	25	0	28	45	1.54
87147--87269	14	8.8	14	66	19	60	26	0	27	45	1.54
87167--87271	28	3.8	28	75	5	104	25	0	29	44	1.54
88919--88985	21	3.2	21	72	16	59	31	0	17	50	1.47
89130--89167	17	2.2	17	86	9	51	57	5	15	21	1.57
92423--92513	30	2.9	30	91	4	137	27	14	16	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92602--92675	37	2.0	36	84	2	94	25	9	13	51	1.71
93583--93623	16	2.6	16	88	0	55	21	14	31	31	1.94
93593--93625	16	2.1	16	94	0	57	27	12	21	39	1.88
94355--94395	21	2.0	21	90	0	64	19	9	21	48	1.77
98032--98070	16	2.4	16	95	0	69	25	17	33	23	1.96
99281--99327	18	2.5	19	86	3	60	57	2	4	36	1.30
99481--99527	18	2.5	19	89	3	69	59	0	4	36	1.17
99480--99548	27	2.6	26	78	15	70	59	1	2	36	1.21
99172--99570	200	2.0	200	91	1	647	48	16	9	25	1.76
101393--101417	8	3.1	8	100	0	50	48	0	0	52	1.00

Tables:   1

The End!