genome.fa.s2109.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002109.1 Hibiscus syriacus cultivar Beakdansim tig00004314_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70063

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2253--2532	42	6.7	42	93	1	456	19	18	25	36	1.95
4372--4423	23	2.2	23	86	6	68	34	25	15	25	1.95
7718--7746	13	2.1	14	93	6	51	37	17	0	44	1.49
8629--8680	23	2.2	24	86	6	70	32	21	19	26	1.97
8660--8697	18	2.1	18	100	0	76	28	26	21	23	1.99
11792--11844	24	2.1	27	82	10	67	60	3	3	32	1.32
18017--18081	28	2.3	28	89	0	94	35	26	16	21	1.95
30631--30659	3	9.7	3	100	0	58	31	0	0	68	0.89
31582--31624	18	2.4	18	100	0	86	60	23	6	9	1.51
32412--32483	24	3.0	24	81	2	92	50	18	11	20	1.77
32420--32504	12	7.3	11	70	17	55	48	17	14	20	1.81
34938--34977	15	2.5	16	88	8	55	25	27	35	12	1.92
34984--35024	18	2.3	18	82	0	55	12	17	48	21	1.79
37087--37158	24	3.0	24	85	2	101	50	18	12	19	1.78
37091--37159	12	5.8	12	75	10	61	49	18	14	17	1.80
37089--37179	47	1.9	48	82	10	116	48	17	14	19	1.81
38409--38443	18	1.9	18	94	0	61	8	20	51	20	1.73
39411--39477	28	2.5	28	87	4	102	64	7	8	19	1.46
39466--39499	10	3.6	10	84	15	54	64	0	8	26	1.22
45017--45053	2	18.5	2	100	0	74	51	0	0	48	1.00
47996--48037	13	2.9	14	82	10	50	59	4	0	35	1.19
53236--53350	59	1.9	59	91	0	185	30	9	19	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58363--58591	45	5.2	45	94	3	392	32	30	21	14	1.94
58363--58591	87	2.6	88	90	4	370	32	30	21	14	1.94
60727--60778	22	2.4	22	75	15	54	26	1	19	51	1.57
62421--62458	18	2.1	18	90	0	58	21	5	0	73	1.02

Tables:   1

The End!