genome.fa.s2131.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002131.1 Hibiscus syriacus cultivar Beakdansim tig00004360_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85506

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8217--8257	21	2.0	21	85	9	57	58	0	4	36	1.20
16074--16101	13	2.2	13	100	0	56	60	0	17	21	1.36
18919--18961	12	3.5	12	75	6	50	55	0	4	39	1.20
18915--18975	25	2.4	25	89	8	88	59	1	3	36	1.24
24152--24207	27	2.1	26	83	3	67	3	58	5	32	1.37
25572--25623	27	1.9	27	88	7	79	53	13	7	25	1.65
27414--27471	16	3.4	17	78	17	57	37	1	1	58	1.18
33947--33971	5	5.0	5	100	0	50	20	40	40	0	1.52
37044--37106	2	31.5	2	100	0	126	50	0	0	49	1.00
37259--37293	13	2.8	13	95	4	63	31	17	37	14	1.89
37273--37346	33	2.2	33	100	0	148	33	21	27	17	1.96
37342--37421	22	3.4	22	73	18	79	33	18	38	8	1.82
37370--37535	28	5.6	28	78	13	188	33	19	35	10	1.87
37344--37569	61	4.1	51	76	21	213	34	19	35	10	1.86
37364--37554	61	3.1	61	96	0	346	34	20	34	10	1.87
37568--37676	29	3.8	29	95	2	184	14	31	32	22	1.94
37726--37799	37	2.0	37	97	2	141	16	45	13	24	1.83
37804--37838	18	1.9	18	100	0	70	28	17	25	28	1.97
37943--37988	23	2.0	23	100	0	92	47	4	39	8	1.54
37992--38057	4	16.5	4	76	9	55	63	0	34	1	1.04
37943--38003	23	2.6	23	86	5	59	50	6	36	6	1.54
37991--38049	21	2.9	21	94	2	102	62	0	35	1	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38292--38354	28	2.2	30	91	5	103	57	11	0	31	1.34
38296--38361	28	2.4	28	85	10	98	56	10	0	33	1.34
38331--38379	21	2.3	21	85	3	71	53	16	0	30	1.43
38870--38927	25	2.3	25	79	5	64	24	43	15	17	1.87
38986--39065	29	2.8	29	98	0	151	16	31	33	18	1.93
39651--40008	175	2.1	173	84	6	465	35	11	6	46	1.65
42566--42700	60	2.3	58	79	6	146	39	14	11	34	1.83
44958--45029	29	2.5	29	95	0	126	44	9	15	30	1.78
45790--45822	12	2.5	14	85	14	52	45	0	9	45	1.35
49050--49130	42	1.9	42	97	0	153	41	6	23	28	1.78
53423--53485	21	3.0	21	72	4	65	19	15	26	38	1.92
53475--53568	22	4.4	22	77	8	113	18	18	25	38	1.93
53455--53546	41	2.2	41	88	5	132	17	17	23	41	1.90
53606--53726	33	3.4	33	79	17	143	19	18	25	36	1.94
53651--53724	21	3.6	21	74	3	87	21	18	25	33	1.96
53647--53745	41	2.5	40	93	3	164	20	18	23	38	1.93
54497--54582	19	4.4	19	77	9	93	40	20	20	17	1.91
55932--56024	21	4.6	20	78	4	96	38	18	24	18	1.92
55929--56024	41	2.3	41	98	0	183	39	17	23	18	1.92
55932--56024	20	4.6	20	78	4	96	38	18	24	18	1.92
55951--56085	41	3.3	41	81	6	123	37	20	21	20	1.94
56013--56106	20	4.7	20	78	2	80	35	23	18	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56663--56707	19	2.4	19	92	0	72	48	26	15	8	1.74
56703--56906	19	11.1	19	78	13	194	12	21	22	43	1.86
56708--56906	33	5.4	38	79	13	161	12	21	22	44	1.85
56849--56906	20	2.9	20	80	10	64	13	24	18	43	1.87
57628--57665	20	1.9	20	88	0	58	50	21	15	13	1.78
57910--57953	22	2.0	22	100	0	88	18	13	45	22	1.84
58140--58275	41	3.3	42	78	5	118	20	20	20	38	1.94
58158--58237	21	3.9	21	75	6	65	18	18	20	42	1.89
58121--58214	20	4.7	20	78	2	89	24	18	23	34	1.96
58203--58295	21	4.6	20	79	4	105	18	23	18	39	1.92
58203--58298	41	2.3	41	96	0	174	18	22	17	40	1.91
59615--59644	16	1.9	15	93	6	51	33	0	0	66	0.92
60047--60088	19	2.2	19	95	0	75	76	2	9	11	1.12
67488--67519	2	16.0	2	93	0	55	46	0	3	50	1.17
69786--69825	12	3.3	12	92	0	62	57	2	0	40	1.12
70527--70553	14	1.9	14	100	0	54	44	55	0	0	0.99
71351--71388	3	12.7	3	89	10	60	63	0	0	36	0.95
71590--72164	55	10.6	55	83	3	603	30	21	13	34	1.93
72534--73422	214	4.1	215	86	2	1160	32	18	14	34	1.91
74539--74623	45	1.9	44	82	2	107	15	27	17	40	1.89
74621--74645	11	2.3	11	100	0	50	16	8	0	76	1.02
74626--74664	18	2.2	18	90	9	62	12	15	0	71	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77564--77597	10	3.3	10	91	4	50	44	52	2	0	1.16
83158--83212	22	2.5	22	84	0	74	38	12	10	38	1.79

Tables:   1

The End!