genome.fa.s2136.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002136.1 Hibiscus syriacus cultivar Beakdansim tig00004370_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  124423

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5281--5305	2	12.5	2	100	0	50	48	0	0	52	1.00
6789--6833	24	2.0	22	86	8	63	40	0	2	57	1.11
11834--11868	17	2.1	17	89	10	54	57	0	0	42	0.99
11833--11871	16	2.4	16	83	16	53	53	0	0	46	1.00
11832--11877	24	1.9	24	82	8	58	54	2	0	43	1.12
13699--13873	95	1.8	95	98	0	341	36	4	12	47	1.59
14620--14648	12	2.4	12	100	0	58	20	17	6	55	1.65
17050--17085	4	9.5	4	93	6	58	0	19	0	80	0.71
21550--21582	16	2.1	17	88	11	52	42	12	6	39	1.67
24850--24886	15	2.5	15	86	0	56	8	67	16	8	1.40
32537--32578	20	2.2	19	83	12	50	52	0	2	45	1.13
47239--47619	198	2.0	189	86	9	533	47	7	3	41	1.48
48771--48822	17	3.2	17	75	10	54	51	11	3	32	1.56
50487--50529	16	2.7	16	81	0	50	34	11	20	32	1.89
53924--54034	55	2.0	55	96	0	204	32	23	21	22	1.98
59386--59471	43	2.0	43	95	0	154	41	13	13	30	1.84
63298--63346	2	24.5	2	95	0	89	48	0	51	0	1.00
63957--64045	42	2.1	44	89	4	137	53	3	33	8	1.49
64480--64515	17	2.1	18	89	5	56	41	0	0	58	0.98
69842--69889	23	2.1	23	88	0	69	35	12	18	33	1.89
70266--70319	23	2.5	20	75	18	54	42	18	1	37	1.61
70281--70343	23	2.7	23	90	0	90	38	19	6	36	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70695--70748	23	2.5	20	75	18	54	42	18	1	37	1.61
70710--70772	23	2.7	23	90	0	90	38	19	6	36	1.77
71139--71200	22	2.7	23	85	5	81	38	19	6	35	1.77
70001--71615	429	3.8	430	99	0	3193	39	13	8	39	1.74
71553--71606	23	2.5	20	75	18	54	42	18	1	37	1.61
71985--72847	184	4.7	184	97	1	1591	34	15	14	35	1.89
74958--75004	20	2.4	19	79	10	58	19	17	8	55	1.67
76251--76326	30	2.6	29	77	4	89	43	7	6	42	1.60
79201--79257	24	2.4	24	76	5	62	24	7	17	50	1.70
88309--88435	50	2.5	50	81	8	150	15	35	27	21	1.94
91953--92174	111	2.0	111	95	0	399	45	11	8	35	1.70
92250--92278	14	2.1	14	93	6	51	65	6	6	20	1.40
93182--93227	25	1.9	24	82	8	58	43	2	8	45	1.47
97911--97936	6	4.3	6	100	0	52	53	0	0	46	1.00
98717--99128	204	2.0	204	87	0	590	37	14	13	34	1.85
99183--99241	31	1.9	31	92	0	100	49	10	8	32	1.67
109280--109323	20	2.3	19	81	11	54	45	2	22	29	1.65
110898--110946	24	2.0	24	100	0	98	59	4	12	24	1.50
112237--114484	317	7.1	313	92	3	3519	23	18	25	33	1.97
112237--114484	106	21.3	106	93	2	3688	23	18	25	33	1.97
118048--118074	6	4.5	6	100	0	54	55	0	0	44	0.99
123074--123138	32	2.0	33	94	5	116	43	18	13	24	1.87

Tables:   1

The End!