Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000214.1 Hibiscus syriacus cultivar Beakdansim tig00000379_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69884

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1411--1656
41
6.0
41
82
6
291
23
19
19
37
1.94
1419--1656
40
5.8
40
82
7
273
23
19
18
37
1.94
1417--1662
83
3.0
84
82
5
306
23
19
18
37
1.94
4376--4427
22
2.4
22
100
0
104
38
0
3
57
1.17
4860--5275
41
10.2
41
84
8
474
34
19
19
27
1.96
4860--5275
81
5.1
81
83
8
486
34
19
19
27
1.96
11894--11965
30
2.4
31
85
2
92
33
6
22
37
1.81
17121--17383
132
2.0
131
97
0
499
36
7
20
36
1.80
19060--19097
20
2.0
20
89
5
60
34
0
26
39
1.57
27412--27461
22
2.3
22
85
0
64
36
22
18
24
1.95
27953--27997
20
2.3
19
85
14
56
26
31
20
22
1.98
28519--28547
11
2.6
11
100
0
58
58
17
10
13
1.62
35569--35638
34
2.1
32
86
5
95
22
28
15
32
1.95
35907--35948
21
2.0
22
90
4
68
23
23
26
26
2.00
36004--36056
20
2.7
20
90
0
79
28
20
30
20
1.98
36076--36151
20
3.8
20
87
1
89
21
19
32
26
1.97
36373--36412
21
1.9
21
84
0
53
50
10
10
30
1.69
37555--37602
19
2.5
20
82
3
62
29
12
6
52
1.63
38988--39045
21
2.8
21
91
0
98
20
17
39
22
1.92
40502--40671
58
2.8
60
76
14
154
29
20
5
45
1.73
40797--40980
60
3.1
57
75
9
163
42
4
19
33
1.72
44172--46098
4
486.2
4
95
1
3422
25
26
0
48
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47495--47571
35
2.1
39
85
9
108
45
2
1
50
1.23
47504--47578
38
2.1
35
85
7
96
46
2
0
50
1.15
51308--51442
66
2.0
67
91
1
218
30
11
18
40
1.85
69479--69515
18
2.1
18
100
0
74
16
35
16
32
1.91

Tables:   1

The End!