genome.fa.s2144.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002144.1 Hibiscus syriacus cultivar Beakdansim tig00004383_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  293050

Tables:   1   2   

This is table  2  of  2  ( 180 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
169682--169764	30	2.9	30	87	5	109	48	2	0	49	1.14
170808--170887	12	6.4	12	73	18	74	56	0	0	43	0.99
170774--170862	28	3.4	27	76	17	80	56	0	1	42	1.06
170753--170904	65	2.4	64	86	7	222	56	1	0	40	1.15
170810--170883	23	3.0	25	81	16	91	54	0	0	45	1.00
170806--170886	37	2.1	39	84	11	105	58	0	0	41	0.98
171273--171304	16	2.0	16	93	0	55	40	0	6	53	1.26
176361--176436	32	2.3	32	84	2	89	22	11	25	40	1.88
177350--177477	65	1.9	67	90	7	208	39	10	10	39	1.74
186220--186270	21	2.4	21	93	0	84	25	31	15	27	1.96
187659--187818	69	2.3	69	97	0	302	18	37	5	38	1.75
198224--198274	19	2.7	19	96	0	93	25	31	21	21	1.98
198322--198374	21	2.5	21	81	6	72	20	26	18	33	1.96
198364--198415	21	2.5	21	87	3	70	38	17	23	21	1.93
198404--198538	20	6.7	20	78	7	103	33	25	17	23	1.96
198445--198538	40	2.3	40	81	3	118	29	26	18	25	1.98
199080--199137	20	2.9	20	97	0	107	37	24	24	13	1.91
199080--199146	20	3.3	20	89	4	100	38	22	22	16	1.92
199080--199155	20	3.8	20	87	3	82	40	19	22	17	1.91
199080--199155	40	1.9	40	86	5	109	40	19	22	17	1.91
199179--199232	14	3.5	14	73	22	54	12	20	18	48	1.81
199161--199231	33	2.2	33	81	0	79	21	19	19	39	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
200786--200874	42	2.2	42	83	4	119	22	15	38	23	1.93
200812--200872	21	2.9	21	73	9	70	21	13	42	22	1.87
200795--200872	42	1.9	40	89	5	120	19	15	41	24	1.90
201213--201284	20	3.6	20	90	0	72	34	26	16	22	1.95
201219--201304	40	2.2	40	82	4	102	34	25	20	18	1.96
201239--201314	20	3.8	20	91	1	109	35	22	25	17	1.95
201356--201486	19	7.3	19	69	18	66	13	19	21	45	1.85
201373--201431	14	3.9	14	72	20	55	10	16	22	50	1.75
201356--201447	33	2.8	33	94	0	157	13	18	19	48	1.80
201441--201486	20	2.3	20	88	0	65	15	21	26	36	1.93
202026--202073	18	2.7	18	83	0	69	18	12	41	27	1.86
203400--203449	20	2.5	20	83	0	55	38	26	20	16	1.92
203712--203755	22	2.0	22	90	0	70	20	15	40	22	1.90
203942--204055	20	5.7	20	84	6	140	22	18	27	31	1.97
203922--204057	41	3.3	41	84	6	186	22	17	25	33	1.96
204045--204096	20	2.5	20	81	3	59	21	23	15	40	1.91
210113--210148	17	2.1	18	89	5	56	41	0	0	58	0.98
210501--210531	2	16.0	2	93	6	55	51	0	0	48	1.00
218289--218354	12	5.6	12	73	8	55	1	7	7	83	0.87
218297--218347	14	3.7	14	84	10	61	1	9	7	80	0.98
218289--218356	23	2.8	23	77	16	75	1	7	8	82	0.91
221187--221271	42	2.0	42	97	0	161	29	24	15	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
225009--225065	27	2.1	28	90	3	89	40	3	5	50	1.42
226554--226621	32	2.2	32	82	10	79	50	4	4	41	1.42
234186--234270	26	3.3	25	94	0	125	22	8	20	49	1.75
236746--236784	2	19.0	2	94	5	69	48	0	2	48	1.15
236748--236789	8	5.1	9	94	5	56	47	0	4	47	1.23
238703--238741	21	1.9	20	85	15	53	51	12	25	10	1.71
262588--262632	23	1.9	24	86	13	67	33	0	2	64	1.06
262597--262659	33	2.0	31	84	6	81	38	0	1	60	1.07
264914--264988	34	2.2	33	80	15	82	20	1	16	62	1.39
264986--265068	38	2.2	36	83	16	107	27	7	8	56	1.55
268452--268500	16	3.0	16	80	11	55	69	6	2	22	1.21
271302--271353	23	2.2	24	80	10	63	53	1	0	44	1.11
273204--273420	106	2.0	109	94	5	388	28	23	16	31	1.96
273382--273454	24	3.2	24	64	28	68	27	26	19	27	1.99
273375--273464	44	2.0	44	100	0	180	30	24	21	24	1.99
290962--291050	32	2.9	31	89	3	126	32	21	21	24	1.98

Tables:   1   2

The End!