genome.fa.s2150.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002150.1 Hibiscus syriacus cultivar Beakdansim tig00004391_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  133868

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1933--1997	18	3.7	18	75	19	73	27	32	18	21	1.97
4705--4849	64	2.3	64	80	4	150	31	20	22	24	1.98
10419--10481	25	2.5	25	86	2	81	42	6	3	47	1.44
10883--10997	59	1.9	60	89	1	178	35	14	17	32	1.90
10888--11020	59	2.2	59	85	4	160	35	15	17	31	1.91
19701--19736	14	2.4	16	90	9	58	36	0	0	63	0.94
22208--22908	351	2.0	350	99	0	1375	42	12	16	27	1.85
28675--28747	23	3.2	23	92	0	110	38	21	4	35	1.73
28684--28748	23	2.8	23	95	0	112	35	23	3	38	1.70
29165--29237	23	3.2	23	92	0	119	38	21	5	34	1.77
28274--30070	490	3.7	490	97	0	3358	40	10	7	41	1.69
29655--29727	23	3.2	23	92	0	110	38	21	4	35	1.73
28274--30070	979	1.8	977	96	1	3370	40	10	7	41	1.69
32565--33687	183	6.1	183	95	0	1930	33	16	14	35	1.89
34551--34607	3	19.0	3	77	0	60	24	33	7	35	1.82
34551--34623	12	6.1	12	85	0	74	23	32	9	34	1.87
34577--34631	12	4.6	12	90	0	92	18	34	12	34	1.89
34573--34636	6	10.7	6	75	0	56	18	32	10	37	1.86
36099--37468	200	6.9	200	96	1	2508	30	17	14	37	1.90
36099--37468	594	2.3	597	95	2	2502	30	17	14	37	1.90
37575--37635	19	3.3	18	88	2	59	52	11	1	34	1.47
37587--37635	19	2.6	19	96	0	89	55	10	2	32	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39426--39491	33	2.0	33	90	0	105	22	48	0	28	1.51
39525--39589	21	3.1	21	93	0	103	16	30	10	41	1.83
41614--41666	24	2.2	24	83	6	63	26	7	13	52	1.66
41806--41848	20	2.3	18	85	14	61	20	16	11	51	1.75
41992--42038	20	2.4	19	86	10	67	19	17	8	55	1.67
41778--42250	181	2.6	182	88	1	691	26	16	13	42	1.86
43711--43753	22	2.0	22	100	0	86	13	27	13	44	1.83
48892--48953	19	3.3	19	84	4	81	27	16	9	46	1.78
55551--55579	2	14.5	2	100	0	58	51	0	0	48	1.00
55724--55750	2	13.5	2	100	0	54	51	0	0	48	1.00
57338--57381	23	1.9	23	90	0	70	45	9	25	20	1.80
58844--58869	12	2.2	12	100	0	52	42	11	7	38	1.70
60000--60060	23	2.6	25	79	10	74	42	4	0	52	1.23
60280--60340	31	2.0	31	90	0	95	54	14	6	24	1.64
62096--62198	52	2.0	52	90	3	163	34	25	11	28	1.91
62329--62500	91	1.9	91	93	0	299	28	13	25	32	1.94
63103--63148	16	2.7	18	83	6	60	32	2	2	63	1.19
74324--74766	224	2.0	225	92	3	741	45	7	7	39	1.61
74832--74877	20	2.3	19	89	10	74	54	10	17	17	1.70
74998--75044	20	2.4	19	79	10	58	53	8	17	21	1.70
77344--77404	32	1.9	32	86	0	86	29	1	44	24	1.63
79194--79242	19	2.6	19	93	0	80	30	2	10	57	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79360--81311	198	9.9	198	96	1	3523	36	15	15	31	1.90
79360--81311	397	4.9	395	96	1	3526	36	15	15	31	1.90
82691--82770	23	3.5	23	89	0	124	35	8	18	37	1.82
82731--82784	23	2.5	21	77	16	56	35	1	20	42	1.63
83994--84062	20	3.5	20	97	0	129	40	20	20	18	1.92
84627--84718	20	4.6	20	83	4	87	14	16	22	46	1.82
84682--84725	20	2.2	20	91	0	70	11	13	20	54	1.69
86410--86560	34	4.3	34	74	14	144	43	19	19	16	1.88
86473--86541	20	3.5	20	89	0	93	37	21	20	20	1.94
86586--86683	20	4.9	20	93	0	160	20	19	20	39	1.92
90163--90265	36	2.9	36	98	0	197	23	17	17	41	1.90
98195--98296	36	2.8	36	93	0	168	24	15	16	43	1.87
99888--99960	19	4.0	18	72	21	62	49	28	15	6	1.70
100307--100342	14	2.6	14	90	0	54	30	0	22	47	1.52
100479--100538	19	3.4	19	67	21	58	13	20	18	48	1.81
100498--100551	14	3.5	14	73	22	54	11	24	20	44	1.83
100477--100560	33	2.5	33	94	0	141	14	22	17	45	1.85
100543--100637	20	4.8	20	79	8	77	21	20	23	35	1.96
100543--100636	40	2.3	40	82	10	120	20	20	23	36	1.95
103483--103529	20	2.3	20	96	0	85	21	19	29	29	1.97
103516--103564	20	2.5	20	96	0	89	18	20	20	40	1.91
104035--104085	21	2.4	21	83	0	66	27	1	1	68	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106556--106588	17	1.9	17	93	0	57	36	3	12	48	1.56
107807--107848	21	2.0	21	95	0	75	47	7	14	30	1.71
109817--109855	19	2.0	20	85	5	53	43	17	15	23	1.87
109855--109912	28	2.1	28	84	9	75	24	15	12	48	1.79
113410--113459	23	2.2	23	96	3	93	8	28	14	50	1.70
115956--115981	11	2.4	11	100	0	52	50	7	15	26	1.71
131307--131331	2	12.5	2	100	0	50	52	0	0	48	1.00

Tables:   1

The End!