genome.fa.s216.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000216.1 Hibiscus syriacus cultivar Beakdansim tig00000384_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  227886

Tables:   1   2   

This is table  2  of  2  ( 171 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
173543--173590	21	2.3	21	96	0	87	27	18	12	41	1.86
174118--174392	38	7.3	37	77	13	233	46	4	5	43	1.47
174193--174283	45	2.0	46	87	6	132	48	1	4	46	1.29
174234--174426	35	5.4	35	81	9	221	46	4	6	43	1.49
174109--174357	120	2.1	119	91	3	403	46	4	5	43	1.44
174410--174466	2	28.5	2	100	0	114	50	0	0	49	1.00
174479--174538	3	20.0	3	100	0	120	33	0	0	66	0.92
175793--175827	10	3.7	10	88	11	56	20	5	0	74	1.02
179404--179469	33	2.0	33	93	0	114	27	15	24	33	1.95
184105--184197	21	4.5	21	78	4	100	39	18	24	17	1.91
184105--184197	41	2.3	41	100	0	186	39	18	24	17	1.91
184124--184258	41	3.3	41	82	6	132	38	20	21	19	1.94
184186--184279	20	4.7	20	80	2	89	34	24	18	23	1.96
184793--184863	18	3.7	19	77	7	72	46	23	18	11	1.81
184793--184851	18	3.2	18	80	7	73	45	22	20	11	1.83
184859--185043	19	10.1	19	75	14	165	11	22	21	44	1.85
184859--185043	33	5.1	38	78	12	147	11	22	21	44	1.85
184986--185043	20	2.9	20	80	10	64	13	24	18	43	1.87
187046--187168	42	2.9	42	80	2	122	22	36	17	22	1.95
187102--187168	21	3.2	21	66	6	55	23	35	20	19	1.95
188523--188558	14	2.6	14	95	0	63	30	0	25	44	1.54
188741--188867	33	3.9	32	83	8	166	15	20	19	44	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
188734--188866	66	2.0	66	92	0	221	17	20	19	42	1.89
191159--191183	12	2.1	12	100	0	50	0	28	0	72	0.86
191358--191411	24	2.2	24	90	0	81	38	20	16	24	1.92
192469--192525	20	2.8	20	94	0	96	40	19	22	17	1.91
192544--192682	33	3.9	35	83	13	130	14	22	16	46	1.83
192544--192682	19	7.8	19	84	13	190	14	22	16	46	1.83
192544--192663	52	2.3	52	97	0	231	13	22	17	46	1.82
192563--192711	71	2.1	71	91	0	235	14	22	18	44	1.86
192544--192711	52	3.2	51	86	6	187	14	22	19	44	1.86
194699--194765	19	3.5	19	83	4	80	37	22	23	16	1.94
194699--194754	20	2.9	19	86	5	85	35	21	25	17	1.95
194754--194811	14	3.9	14	79	16	71	48	25	17	8	1.75
194738--194816	32	2.4	33	95	2	142	46	24	18	10	1.80
194823--194885	18	3.7	18	75	18	71	12	20	22	44	1.85
194870--194924	20	2.8	19	83	8	65	16	23	23	36	1.94
195397--195441	18	2.5	18	88	0	72	13	15	44	26	1.83
196759--196796	20	1.9	20	88	0	58	50	21	15	13	1.78
197059--197102	22	2.0	22	95	0	79	18	15	45	20	1.85
197289--197382	20	4.7	20	80	2	89	23	18	24	34	1.96
197269--197383	20	5.7	20	78	5	88	23	17	23	35	1.95
197372--197464	20	4.5	21	78	4	100	17	24	18	39	1.91
197311--197445	41	3.3	41	82	4	139	19	21	20	38	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
197372--197464	41	2.3	41	100	0	186	17	24	18	39	1.91
208199--208297	39	2.5	39	81	3	128	18	37	3	41	1.66
213325--213423	39	2.5	39	80	6	121	18	39	3	39	1.66
214296--214330	17	2.1	16	94	5	61	0	14	0	85	0.59
219267--219335	21	3.3	21	77	0	66	23	15	27	33	1.95
219878--219914	17	2.1	17	95	5	65	37	5	13	43	1.67
226117--226174	21	2.8	21	84	10	91	22	18	25	32	1.97

Tables:   1   2

The End!