genome.fa.s2202.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002202.1 Hibiscus syriacus cultivar Beakdansim tig00004489_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  133808

Tables:   1   

This is table  1  of  1  ( 92 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3315--3495	45	4.0	45	94	1	301	22	44	8	24	1.80
3315--3495	89	2.0	90	92	1	301	22	44	8	24	1.80
8792--8826	16	2.1	17	89	5	54	37	0	0	62	0.95
10215--10265	19	2.7	19	78	3	59	66	3	9	19	1.36
10271--10300	15	1.9	16	93	6	53	63	3	6	26	1.35
10267--10311	19	2.4	19	81	7	56	66	2	8	22	1.30
12411--13283	209	4.2	210	94	1	1524	23	18	24	34	1.96
12411--13283	105	8.3	105	95	1	1522	23	18	24	34	1.96
14038--14077	17	2.4	16	84	15	55	2	12	0	85	0.71
14038--14077	8	4.9	8	85	14	55	2	12	0	85	0.71
14031--14072	20	2.0	21	86	4	59	2	14	0	83	0.75
24615--24649	10	3.4	10	92	4	52	77	0	5	17	0.96
24623--24661	15	2.7	14	88	4	51	74	2	2	20	1.06
24917--24959	2	22.0	2	85	4	61	46	4	0	48	1.22
24999--25066	27	2.6	26	76	4	75	60	7	4	27	1.43
25058--25096	2	20.5	2	89	10	64	51	0	0	48	1.00
26794--26827	2	17.0	2	100	0	68	50	0	0	50	1.00
29340--29466	50	2.5	50	83	5	141	16	33	30	18	1.94
29346--29466	51	2.4	50	83	5	145	16	33	30	19	1.94
29478--29598	51	2.5	49	82	8	149	23	23	23	28	1.99
31763--31890	51	2.5	49	83	6	148	16	33	31	18	1.93
31914--32024	51	2.3	49	82	6	145	24	23	21	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35652--35869	110	1.9	113	87	5	325	46	9	7	36	1.64
36001--36041	10	4.1	10	84	12	57	39	0	29	31	1.57
37149--37229	28	2.7	30	81	9	94	43	24	6	25	1.77
46851--46879	15	1.9	15	100	0	58	37	13	6	41	1.72
48168--48228	25	2.5	24	82	12	72	37	0	4	57	1.20
48196--48272	31	2.5	31	80	12	81	37	0	5	57	1.21
48240--48275	18	2.1	18	89	5	56	38	0	2	58	1.13
50569--50595	2	13.5	2	100	0	54	48	0	0	51	1.00
52013--52096	42	2.0	42	97	0	159	27	10	42	19	1.84
53854--53920	20	3.3	20	89	0	98	35	20	17	25	1.95
53894--54000	20	5.4	19	80	9	81	38	23	15	22	1.93
53928--54000	19	3.7	19	80	12	76	36	23	15	24	1.93
54153--54190	16	2.5	15	84	12	51	28	5	0	65	1.14
54225--54264	20	2.0	20	95	0	71	37	20	17	25	1.94
54238--54344	20	5.4	19	80	9	81	38	23	15	22	1.93
54272--54344	19	3.7	19	80	12	76	36	23	15	24	1.93
54500--54538	16	2.5	15	84	8	51	28	5	0	66	1.12
55079--55112	12	2.8	12	90	0	50	55	29	0	14	1.40
55238--55290	24	2.2	24	82	0	61	22	16	22	37	1.94
57709--57844	20	7.1	20	77	9	131	17	18	21	42	1.89
58264--58300	18	2.1	18	89	0	56	32	5	10	51	1.60
58256--58308	24	2.2	24	86	0	70	35	3	13	47	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58606--58690	37	2.2	39	91	4	138	47	20	14	18	1.83
58935--58984	20	2.5	20	90	0	82	20	14	24	42	1.88
59108--59141	14	2.4	14	90	9	52	47	20	0	32	1.51
60005--60031	13	2.1	13	100	0	54	14	40	7	37	1.74
60544--60619	21	3.6	21	75	7	82	21	19	35	23	1.96
60802--60844	15	2.8	15	78	3	50	65	4	2	27	1.25
63831--64017	31	6.0	31	93	1	313	37	21	19	21	1.95
64828--64872	21	2.1	21	87	0	63	15	24	28	31	1.96
65728--65970	20	12.2	20	78	12	171	21	15	25	37	1.93
65736--65907	40	4.3	40	84	8	210	20	17	23	38	1.93
65728--65907	60	3.0	60	79	12	233	20	17	22	39	1.92
65728--65952	80	2.8	81	81	11	227	21	15	24	37	1.93
65738--65970	60	3.9	59	76	13	201	21	15	26	36	1.93
66893--66926	6	5.7	6	100	0	68	35	47	17	0	1.48
67418--67460	6	7.2	6	100	0	86	0	16	48	34	1.46
67457--67487	6	5.2	6	100	0	62	32	0	32	35	1.58
67427--67478	12	4.3	12	90	0	50	11	9	44	34	1.73
67427--67466	18	2.2	18	90	0	62	5	12	47	35	1.63
67635--67704	20	3.5	20	70	18	72	40	24	22	12	1.89
67632--67725	41	2.3	41	100	0	188	38	25	21	14	1.92
67655--67728	21	3.6	21	72	17	82	37	27	20	14	1.92
68509--68537	2	15.0	2	92	7	51	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68882--68914	12	2.8	12	86	4	50	27	0	0	72	0.85
72700--72728	13	2.2	13	100	0	58	20	31	6	41	1.79
75305--75334	13	2.2	14	94	5	53	53	23	13	10	1.69
81169--81244	23	3.4	23	84	8	88	23	26	25	25	2.00
81169--81244	22	3.5	21	79	12	73	23	26	25	25	2.00
86124--86180	25	2.3	24	80	14	62	38	10	1	49	1.48
86506--86571	31	2.2	31	83	8	82	42	19	16	21	1.89
98463--98517	8	7.0	8	75	17	53	72	0	5	21	1.04
99697--99738	15	2.9	14	85	3	57	69	0	9	21	1.17
99858--100000	39	3.9	38	74	16	122	42	8	4	44	1.56
99854--100000	76	2.0	71	81	13	165	41	8	4	45	1.55
99930--100014	35	2.5	32	81	11	91	44	8	2	44	1.46
107148--107236	3	29.7	3	90	4	144	65	0	1	33	1.00
109177--109284	50	2.3	49	84	7	134	33	13	12	40	1.82
109336--109411	3	25.7	3	97	2	145	32	0	0	67	0.91
113386--113429	20	2.2	20	95	0	79	52	0	27	20	1.47
114274--114491	103	2.1	103	93	0	382	26	13	23	36	1.92
114508--114575	23	3.0	23	87	8	86	20	26	26	26	1.99
125183--125271	44	2.0	44	80	8	101	52	4	2	40	1.34
125297--125392	46	2.0	47	84	7	124	32	2	12	53	1.50
125386--125446	23	2.4	25	75	22	65	36	6	1	55	1.36
125590--125635	15	2.9	16	83	9	58	21	30	23	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129444--129493	21	2.4	21	86	0	64	36	24	22	18	1.95
129509--129575	2	34.0	2	93	3	118	50	0	1	47	1.10
130492--130550	2	30.0	2	89	3	84	44	0	5	50	1.24
131033--131082	20	2.5	20	80	0	55	24	22	16	38	1.93

Tables:   1

The End!