Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002203.1 Hibiscus syriacus cultivar Beakdansim tig00004490_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48299

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1286--1310
12
2.1
12
100
0
50
68
0
0
32
0.90
4843--4881
15
2.5
15
83
4
51
17
7
0
74
1.05
4914--4946
2
17.0
2
93
6
59
48
0
0
51
1.00
4948--5310
36
9.9
36
81
14
365
45
3
5
46
1.42
5332--5369
18
2.1
19
85
14
53
15
7
0
76
1.01
6430--6472
16
2.7
15
92
3
68
25
2
0
72
0.97
6421--6472
4
13.0
4
79
20
56
26
1
0
71
0.97
6583--6654
24
3.1
24
82
7
78
12
9
4
73
1.22
6595--6665
22
3.2
22
80
9
74
11
8
2
77
1.09
9640--9695
21
2.5
23
83
13
73
82
0
3
14
0.81
9641--9693
16
3.2
16
82
15
56
81
0
3
15
0.83
10666--10695
16
1.9
15
93
6
51
13
26
40
20
1.89
11030--11069
2
20.5
2
94
5
73
50
0
0
50
1.00
10967--11292
36
9.0
36
80
9
333
44
5
4
46
1.45
12542--12566
7
3.6
7
100
0
50
88
0
0
12
0.53
12551--12608
23
2.5
24
80
8
66
74
3
10
12
1.19
13812--13856
20
2.2
21
88
4
65
75
0
6
17
1.01
13903--14244
34
9.3
36
83
9
365
45
6
2
45
1.45
14031--14154
11
10.8
11
66
8
59
44
8
3
43
1.51
14366--14403
15
2.4
16
86
4
51
57
0
0
42
0.98
14378--14417
21
2.0
20
90
5
62
47
2
2
47
1.29
14571--14614
20
2.1
21
87
4
63
29
6
0
63
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15085--15109
13
1.9
13
100
0
50
56
0
8
36
1.29
15385--15424
19
2.1
19
86
13
55
40
7
2
50
1.44
15502--15564
25
2.3
26
73
10
65
47
3
4
44
1.40
20043--20209
60
2.8
59
77
6
201
41
5
19
32
1.76
22096--22134
18
2.2
18
86
9
53
46
2
0
51
1.14
22394--22422
12
2.4
12
100
0
58
34
6
0
58
1.25
22921--23048
63
2.1
61
85
8
170
55
7
4
32
1.49
23761--23787
14
1.9
14
100
0
54
29
37
14
18
1.91
25302--25344
15
2.7
16
82
17
54
34
4
0
60
1.17
25690--25728
21
1.9
19
85
10
51
51
2
2
43
1.29
27559--27596
5
7.8
5
85
5
51
21
0
2
76
0.91
27545--27598
23
2.2
25
77
9
58
22
1
3
72
1.10
28021--28060
21
1.9
21
100
0
80
40
15
25
20
1.90
31576--31605
15
2.0
15
93
0
51
56
0
0
43
0.99
34365--34403
17
2.3
17
82
8
53
61
0
0
38
0.96
34388--34412
11
2.3
11
100
0
50
68
0
0
32
0.90
34402--34771
136
2.6
141
83
7
445
46
7
7
38
1.61
36076--36104
2
15.0
2
92
7
51
51
0
0
48
1.00
36071--36138
3
21.3
3
85
5
57
55
0
0
44
0.99
36071--36136
18
3.6
17
77
22
64
56
0
0
43
0.99
36267--37138
76
11.5
76
95
0
1501
34
20
19
25
1.96
37801--37880
22
3.6
22
75
18
85
37
12
16
33
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42674--42743
7
10.4
7
77
11
51
2
10
4
82
0.90
43042--43076
2
17.5
2
100
0
70
51
0
0
48
1.00
48161--48199
17
2.3
17
86
0
60
58
0
0
41
0.98

Tables:   1

The End!