Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002210.1 Hibiscus syriacus cultivar Beakdansim tig00004502_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  328873

Tables:   1   2   

This is table  2  of  2  ( 147 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
242423--242472
26
1.9
26
88
8
75
38
4
0
58
1.17
244193--244229
14
2.6
14
95
0
65
75
0
5
18
0.99
246857--246896
9
4.4
9
80
0
53
70
0
2
27
1.01
251647--251682
16
2.2
16
95
0
63
16
22
5
55
1.62
253828--253944
35
3.3
35
88
5
155
47
17
5
29
1.69
260289--260313
12
2.1
12
100
0
50
68
0
0
32
0.90
260408--260439
2
16.0
2
100
0
64
50
0
0
50
1.00
266141--266225
2
42.5
2
100
0
170
50
0
0
49
1.00
267357--267396
3
13.3
3
89
10
64
65
0
2
32
1.06
270232--270262
16
2.0
15
93
6
53
51
6
3
38
1.44
278850--279062
6
35.5
6
91
0
282
32
8
16
41
1.80
278850--279062
18
11.8
18
93
0
318
32
8
16
41
1.80
279290--279325
17
2.2
17
95
5
65
61
0
0
38
0.96
284587--284715
63
2.0
63
87
0
186
46
17
20
15
1.84
293255--293320
23
2.9
23
88
0
96
34
18
21
25
1.96
293533--293588
21
2.5
23
78
18
64
33
0
10
55
1.35
295987--296015
15
1.9
15
100
0
58
34
3
0
62
1.12
295980--296020
13
3.0
13
83
13
55
39
2
0
58
1.11
295989--296021
15
2.3
15
89
5
50
45
3
0
51
1.16
301024--301118
12
7.8
12
68
13
59
50
17
12
18
1.77
301022--301132
24
4.5
24
73
11
91
49
17
14
18
1.80
302394--302429
15
2.4
15
100
0
72
47
19
8
25
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
302840--302912
36
2.0
36
97
0
137
30
20
8
41
1.81
303561--303596
18
2.0
18
94
0
63
13
16
47
22
1.82
306079--306115
19
2.0
19
94
5
67
32
21
18
27
1.97
324370--324416
22
2.1
22
88
0
67
36
2
21
40
1.65
326548--326585
17
2.2
18
85
4
51
31
10
18
39
1.85

Tables:   1   2

The End!