genome.fa.s2240.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002240.1 Hibiscus syriacus cultivar Beakdansim tig00004555_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58877

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2072--2104	15	2.1	17	88	11	52	27	3	24	45	1.68
5041--5067	14	1.9	14	100	0	54	29	11	22	37	1.89
5291--5316	3	8.7	3	100	0	52	0	0	30	69	0.89
6682--6724	21	2.1	20	87	12	61	23	2	0	74	0.93
15077--15123	25	1.9	25	87	12	71	40	19	0	40	1.51
15077--15123	24	1.9	24	87	12	69	40	19	0	40	1.51
15077--15130	24	2.2	24	84	12	67	37	25	0	37	1.57
20297--20567	36	7.5	36	83	2	301	32	20	25	22	1.98
21342--21855	257	2.0	257	98	0	992	37	10	21	30	1.87
23289--23329	20	2.1	20	86	4	57	41	4	17	36	1.71
24386--24477	42	2.2	42	86	0	130	21	11	28	38	1.89
25054--25078	12	2.1	12	100	0	50	52	24	0	24	1.48
26644--26798	20	7.6	20	75	13	104	26	19	16	37	1.93
26639--26802	41	4.0	41	75	9	172	26	19	17	36	1.94
26728--26839	21	5.4	21	76	10	95	25	19	21	33	1.97
29506--29552	22	2.1	22	100	0	94	36	4	12	46	1.62
34930--34979	19	2.6	19	90	0	73	28	20	22	30	1.98
36123--36159	19	1.9	19	94	0	65	27	16	16	40	1.89
36729--36814	2	43.0	2	100	0	172	50	0	0	50	1.00
37997--38314	21	14.6	21	68	22	140	23	22	20	33	1.98
38015--38043	14	2.1	14	100	0	58	24	20	27	27	1.99
37997--38064	35	1.9	35	93	0	118	20	22	27	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38029--38405	90	4.2	90	90	2	535	24	22	20	32	1.97
38212--38384	70	2.5	70	84	10	205	23	23	19	33	1.97
38523--38565	6	7.2	6	94	0	68	34	44	16	4	1.68
39203--39513	21	15.0	19	80	9	163	37	21	18	22	1.94
39169--39452	42	6.8	42	82	7	337	38	21	18	22	1.94
39222--39494	147	1.9	146	92	3	458	37	21	19	21	1.94
42236--42275	20	2.0	21	90	9	66	30	25	20	25	1.99
46090--46297	76	2.8	74	88	2	290	29	0	12	57	1.41
49941--49995	24	2.2	26	84	9	71	20	9	1	69	1.25
51278--51476	21	9.6	20	74	16	140	21	19	22	36	1.95
51339--51476	42	3.3	41	85	9	167	21	20	21	36	1.95
51287--51430	63	2.3	63	90	3	227	20	20	22	37	1.94
51360--51476	41	2.8	42	92	2	200	21	20	22	35	1.96
52174--52317	21	6.9	20	73	15	98	34	21	20	23	1.96
52177--52445	42	6.3	42	77	13	232	34	21	20	24	1.97
52376--52471	21	4.6	21	89	0	147	29	27	19	23	1.99
52480--52554	21	3.6	21	90	0	114	24	21	25	29	1.99

Tables:   1

The End!