genome.fa.s2257.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002257.1 Hibiscus syriacus cultivar Beakdansim tig00004590_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52072

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3582--3653	31	2.4	30	86	6	92	31	4	6	56	1.45
3734--3787	29	2.0	28	85	10	76	31	14	9	44	1.77
15767--15793	2	13.5	2	100	0	54	51	0	0	48	1.00
16808--16868	8	7.6	8	73	14	54	55	3	0	40	1.16
16808--16865	23	2.4	25	85	5	66	55	3	0	41	1.17
16819--16865	25	2.0	23	91	8	76	55	2	0	42	1.12
17378--17478	20	5.1	20	87	0	130	36	22	16	23	1.94
21987--22148	29	5.7	29	82	8	179	29	3	18	48	1.65
21986--22148	57	2.9	57	86	5	222	30	3	18	47	1.65
23060--23127	32	2.2	32	83	2	84	13	27	32	26	1.93
27144--27223	27	3.1	26	78	8	76	51	6	1	41	1.35
28490--28549	8	7.2	8	76	16	52	56	1	0	41	1.09
28494--28548	20	2.7	20	88	5	74	54	1	0	43	1.10
28492--28535	14	3.0	14	80	6	52	54	2	0	43	1.12
33279--33353	35	2.1	35	92	0	123	33	29	28	9	1.88
33432--33521	23	3.8	23	82	4	108	37	20	16	25	1.93
34666--34701	18	2.0	18	88	0	54	30	16	0	52	1.44
35978--36054	8	9.5	8	74	18	63	22	25	36	15	1.93
35988--36021	15	2.1	16	89	10	52	23	29	35	11	1.90
36006--36046	21	1.9	22	90	5	66	19	24	39	17	1.92
35999--36086	30	3.0	30	88	5	117	19	22	42	15	1.89
36011--36089	30	2.6	30	91	2	122	16	21	45	16	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36011--36072	13	4.5	13	77	15	70	17	22	43	16	1.87
36005--36095	18	5.2	18	73	18	86	16	21	45	16	1.86
37430--37520	43	2.1	44	89	2	139	57	19	3	19	1.55
37665--37706	19	2.2	19	95	0	75	26	14	23	35	1.93

Tables:   1

The End!