genome.fa.s2258.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002258.1 Hibiscus syriacus cultivar Beakdansim tig00004591_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67192

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
312--342	2	15.5	2	93	0	53	45	3	0	51	1.17
1833--1864	3	11.0	3	93	6	57	31	0	0	68	0.90
1836--1876	17	2.6	16	88	7	57	31	0	0	68	0.90
1820--1875	23	2.5	22	77	13	60	25	0	1	73	0.93
3570--3611	22	2.0	22	90	4	68	35	0	4	59	1.19
3474--3691	117	1.9	117	80	6	262	37	8	9	45	1.66
3474--3698	118	1.9	118	80	7	260	37	8	8	45	1.65
8051--8098	19	2.5	19	96	0	87	43	14	14	27	1.84
8584--8630	17	2.8	17	90	3	69	74	0	25	0	0.82
13432--13686	73	3.5	73	93	1	438	27	20	20	32	1.97
13691--13817	36	3.5	36	73	2	128	30	18	13	37	1.90
13691--13826	73	1.9	73	95	0	245	30	19	13	36	1.90
13691--13849	73	2.2	73	87	4	214	32	19	11	35	1.88
13981--14186	112	1.8	112	91	2	342	37	14	18	29	1.90
13843--14270	235	1.8	233	89	2	669	38	16	19	26	1.92
14653--14697	3	15.0	3	86	9	65	33	2	0	64	1.06
14653--14705	10	5.4	10	82	6	56	32	1	0	66	1.03
14636--14709	33	2.4	30	80	13	87	29	1	1	67	1.07
16077--16152	11	6.5	11	74	18	55	28	3	3	63	1.30
16347--16387	22	1.9	22	90	5	66	34	0	4	60	1.18
17973--18462	38	12.5	39	80	11	493	42	1	7	48	1.39
18173--18230	17	3.2	17	69	21	55	41	1	6	50	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18179--18381	88	2.3	89	88	5	304	42	0	6	49	1.36
18242--18343	50	2.1	49	96	1	186	44	0	5	49	1.33
18469--18516	14	3.4	14	86	11	62	18	6	0	75	1.01
18480--18528	19	2.6	19	75	15	57	16	8	2	73	1.16
23635--24819	84	14.2	84	76	5	956	31	24	19	24	1.98
23653--24814	249	4.6	249	86	1	1509	31	24	19	24	1.98
23635--24798	165	7.0	164	77	7	880	31	24	19	24	1.98
25362--25911	38	14.6	38	86	7	698	43	1	7	47	1.41
27976--29155	84	14.1	84	77	6	986	31	24	19	24	1.98
27994--29155	249	4.6	249	86	1	1527	31	24	19	24	1.98
29771--30261	38	12.9	38	91	2	747	42	1	7	48	1.37
29771--30261	113	4.3	115	91	2	751	42	1	7	48	1.37
32402--32482	32	2.6	30	79	9	90	28	18	23	29	1.98
32465--32537	30	2.4	30	95	0	128	24	20	24	30	1.99
33928--34004	15	5.1	14	72	18	57	27	5	1	66	1.21
33963--34013	26	2.0	26	88	7	79	25	9	0	64	1.24
33948--34071	21	5.9	20	71	16	74	24	4	2	68	1.21
34813--34845	16	2.1	16	94	0	57	57	21	12	9	1.62
34914--34990	16	4.8	16	86	0	109	58	19	11	10	1.61
35422--35455	10	3.4	10	95	0	59	55	20	11	11	1.67
37550--37596	20	2.3	20	85	0	58	40	10	4	44	1.59
37773--37825	14	3.7	14	74	2	52	41	7	5	45	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39902--40047	31	4.7	32	80	7	149	28	31	27	12	1.93
39913--40032	31	3.8	31	85	1	150	29	30	26	13	1.94
39903--40047	62	2.3	62	81	5	168	28	31	26	12	1.93
42859--42912	23	2.4	23	78	9	58	66	1	7	24	1.27
43452--43492	18	2.3	19	87	8	59	51	2	2	43	1.28
47341--47393	20	2.7	20	100	0	106	35	16	22	24	1.95
47424--47463	16	2.4	17	87	4	64	20	17	37	25	1.94
48275--48475	94	2.1	96	88	2	309	39	13	22	24	1.90
49140--49508	45	8.2	45	82	3	431	43	14	20	21	1.87
49143--49480	179	1.9	180	86	0	480	42	14	20	21	1.88
55071--55440	45	8.2	45	84	3	458	45	13	18	23	1.84
65811--65849	20	2.0	20	89	0	60	33	10	23	33	1.88

Tables:   1

The End!