genome.fa.s2266.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002266.1 Hibiscus syriacus cultivar Beakdansim tig00004608_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97464

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1827--1872	23	2.0	23	83	8	58	8	8	8	73	1.24
2200--2755	55	10.3	55	80	6	579	30	20	17	32	1.95
2191--2755	107	5.2	110	80	8	590	30	20	16	32	1.95
2245--2751	270	1.9	271	83	7	665	30	21	16	32	1.95
2922--3006	37	2.3	37	90	6	138	18	18	18	43	1.88
3889--3941	27	2.0	27	100	0	106	26	18	24	30	1.98
4276--4351	8	9.1	8	75	11	64	2	19	0	77	0.88
4283--4351	26	2.6	26	84	6	77	2	18	0	78	0.88
4276--4388	32	3.5	35	77	14	100	5	20	0	74	1.01
4283--4384	34	3.1	35	79	9	99	5	19	0	74	1.02
4313--4368	11	5.3	11	78	19	57	8	16	0	75	1.05
4322--4400	22	4.0	21	70	26	64	10	18	0	70	1.14
4300--4389	32	2.8	33	80	12	107	6	17	0	75	1.01
8613--8659	6	7.7	6	80	4	58	46	14	21	17	1.83
10275--10307	17	1.9	17	93	0	57	54	0	0	45	0.99
11034--11075	2	21.5	2	95	4	77	52	0	0	47	1.00
13157--13691	54	10.0	54	89	1	734	33	22	19	25	1.97
13157--13691	161	3.3	162	87	2	754	33	22	19	25	1.97
18680--18730	23	2.2	24	82	3	59	27	9	11	50	1.70
18988--19061	38	1.9	38	91	5	123	43	13	18	24	1.86
24645--24703	20	2.9	20	76	2	55	44	1	1	52	1.21
24318--24703	186	2.1	186	92	1	639	46	6	2	43	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25812--26086	36	7.9	36	72	15	188	40	13	19	27	1.89
25817--26087	73	3.9	71	74	9	256	40	12	19	27	1.88
25822--26369	138	3.9	137	71	14	489	39	13	19	27	1.89
25966--26086	34	3.5	34	81	10	147	38	13	19	28	1.90
25992--26045	19	3.1	19	71	17	53	40	12	18	27	1.87
26106--26549	36	12.6	36	77	12	397	40	13	20	26	1.89
25741--26528	294	2.6	297	90	5	1183	39	12	19	27	1.89
26106--26549	174	2.5	174	87	2	676	40	13	20	26	1.89
26272--26521	102	2.4	102	79	11	265	40	13	20	25	1.89
26455--26519	21	3.4	21	68	24	70	41	12	21	24	1.87
26446--26576	36	3.6	34	88	5	154	39	13	20	25	1.90
27815--28079	96	2.7	95	87	4	361	31	18	16	33	1.93
30686--30781	29	3.4	28	70	25	69	75	3	7	14	1.15
30714--30763	12	4.2	12	80	12	50	76	2	6	16	1.08
31257--31383	21	6.0	21	90	3	184	22	27	22	28	1.99
31351--31396	22	2.1	22	100	0	92	21	23	19	34	1.96
31541--31592	16	3.1	17	78	13	63	59	1	0	38	1.08
31945--31996	16	3.1	17	78	13	63	59	3	0	36	1.16
32095--32196	21	4.9	21	93	0	159	31	21	24	22	1.98
32204--32253	21	2.4	21	100	0	100	28	28	24	20	1.99
33627--33657	16	1.9	16	93	0	53	22	0	3	74	0.96
36780--36831	26	2.0	26	100	0	104	26	7	7	57	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40921--40972	27	1.9	27	92	0	86	38	3	25	32	1.74
42695--43201	200	2.5	197	84	4	635	31	16	13	38	1.87
44001--44755	199	3.8	199	86	5	1021	31	15	13	39	1.86
44990--45026	18	2.1	18	89	0	56	51	10	5	32	1.60
52536--52573	20	1.9	20	88	0	58	26	34	26	13	1.93
53947--54003	26	2.2	26	93	0	96	43	22	8	24	1.81
64705--65008	124	2.4	124	90	2	466	31	17	27	23	1.97
65735--65969	36	6.5	37	83	7	218	37	22	20	20	1.95
65735--65926	72	2.7	70	84	7	251	36	24	19	19	1.95
65735--65960	72	3.1	69	80	7	245	36	23	19	20	1.95
65728--65969	108	2.2	109	83	4	310	36	23	19	20	1.95
66330--66726	51	7.7	51	85	6	462	32	19	24	23	1.97
66340--66685	155	2.2	153	88	3	507	32	20	25	21	1.98
66644--67009	55	6.7	54	83	5	359	29	15	27	27	1.96
66692--67072	55	7.0	55	83	6	427	29	15	27	27	1.96
66690--67072	108	3.5	108	89	2	527	28	15	27	27	1.96
71708--73237	200	7.7	199	86	2	1890	31	17	14	36	1.89
73218--73256	19	2.1	19	100	0	78	10	10	33	46	1.72
73625--73673	19	2.6	19	96	0	89	55	10	2	32	1.45
75431--75530	33	3.0	33	92	0	164	23	45	1	31	1.60
75447--75500	18	3.2	18	66	15	51	24	40	0	35	1.55
75564--75628	21	3.1	21	95	0	112	13	35	10	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78011--78682	182	3.7	182	90	0	1024	27	16	14	41	1.87
80719--81090	60	6.2	60	83	11	415	27	50	9	13	1.71
80902--81141	60	3.8	60	82	9	255	26	49	10	14	1.74
80721--81141	120	3.4	120	84	9	455	27	49	9	13	1.73
81058--81097	21	1.9	21	94	0	71	35	57	7	0	1.27
85815--85907	32	2.9	33	78	7	104	43	12	6	37	1.69
85852--85922	32	2.2	32	84	0	88	46	12	4	36	1.62
85948--86000	21	2.5	21	93	0	88	39	5	9	45	1.60
85992--86036	20	2.4	18	78	10	54	42	2	2	53	1.25
86275--86314	18	2.2	18	86	0	53	62	2	0	35	1.09
87689--87722	2	17.5	2	93	6	61	52	0	0	47	1.00
88325--88409	39	2.2	39	84	0	107	31	25	5	36	1.80

Tables:   1

The End!