genome.fa.s2273.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002273.1 Hibiscus syriacus cultivar Beakdansim tig00004620_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  802197

Tables:   1   2   3   4   

This is table  2  of  4  ( 367 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
181265--181331	21	3.2	21	68	4	55	19	20	35	23	1.95
181265--181387	42	2.9	41	80	7	113	22	17	36	22	1.95
183387--183547	20	8.8	19	70	19	101	44	22	21	11	1.85
183412--183510	33	3.0	33	87	1	135	40	26	22	11	1.87
183482--183552	19	3.7	19	92	3	115	46	22	19	11	1.81
183548--183614	19	3.5	19	85	2	89	10	16	25	47	1.78
184128--184180	20	2.7	20	93	0	88	26	20	28	24	1.99
184211--184282	20	3.5	20	79	3	90	16	23	19	40	1.91
188693--188727	17	2.1	17	89	10	54	71	0	11	17	1.14
189986--190045	10	5.7	10	75	11	57	71	3	3	21	1.15
189986--190048	22	2.9	22	78	2	56	69	3	4	22	1.21
190572--190635	11	6.1	10	81	15	67	28	1	3	67	1.15
190572--190635	21	3.0	20	82	13	67	28	1	3	67	1.15
190567--190636	32	2.2	32	87	7	97	28	2	2	65	1.21
190872--190914	15	2.9	14	74	12	50	32	16	30	20	1.95
197296--197349	21	2.5	22	80	17	60	40	5	0	53	1.24
197412--197455	17	2.5	17	85	3	52	63	4	0	31	1.14
197446--197490	19	2.3	21	81	11	60	55	0	2	42	1.12
197462--197527	22	2.8	24	75	13	66	50	0	0	50	1.00
197472--197527	24	2.4	24	82	5	71	48	0	0	51	1.00
197822--197855	14	2.4	14	90	0	50	41	11	11	35	1.78
198150--198212	23	2.7	23	80	5	63	46	1	1	50	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
198196--198283	26	3.3	26	79	12	81	50	1	0	48	1.08
198284--198364	31	2.5	33	80	19	98	51	0	1	46	1.08
198307--198349	22	2.0	22	86	9	61	58	0	0	41	0.98
198295--198362	31	2.2	32	87	12	99	54	0	0	45	0.99
198537--198653	42	2.8	42	83	5	139	53	17	8	20	1.69
201457--201489	15	2.2	15	94	0	57	42	9	0	48	1.35
221974--222027	22	2.5	22	96	0	99	62	11	0	25	1.28
224191--224224	17	2.1	17	88	5	52	32	17	17	32	1.94
224438--224492	25	2.1	25	83	6	65	52	0	9	38	1.33
227902--228054	60	2.6	60	81	3	166	43	3	16	35	1.65
229950--229976	2	13.5	2	100	0	54	0	48	0	51	1.00
232530--232589	2	30.0	2	100	0	120	50	0	0	50	1.00
240180--240281	30	3.4	30	91	1	152	32	25	20	21	1.98
240254--240331	31	2.5	31	78	12	88	35	21	20	21	1.96
257310--257365	24	2.4	24	87	3	87	30	26	7	35	1.83
260153--260186	16	2.1	17	94	5	61	23	5	32	38	1.79
266828--266882	21	2.5	23	77	11	62	36	1	1	60	1.18
267310--267417	34	2.9	37	85	10	159	36	1	3	58	1.27
269670--269705	17	2.1	17	100	0	72	11	11	16	61	1.57
282797--283020	75	3.0	75	92	2	362	37	17	15	29	1.90
283336--283363	14	2.0	14	100	0	56	35	21	7	35	1.81
284727--284775	24	2.0	24	96	0	89	46	2	16	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
284764--287625	689	4.0	707	80	7	2924	41	13	12	32	1.82
288338--288380	21	2.0	21	86	0	59	34	27	20	16	1.94
288926--289246	103	3.1	103	95	0	588	25	12	24	37	1.91
289263--289325	23	2.7	23	85	4	83	22	26	25	25	2.00
291664--291691	9	3.1	9	100	0	56	32	10	25	32	1.90
294902--294931	10	3.0	10	100	0	60	0	30	0	70	0.88
295437--295474	20	1.9	20	88	0	58	23	34	31	10	1.89
295956--296272	103	3.1	103	98	0	607	25	12	24	36	1.91
296301--296355	23	2.4	23	87	6	76	20	21	27	30	1.98
296946--300005	602	5.1	600	94	1	5351	40	13	13	32	1.84
299403--301989	714	3.6	708	84	4	3133	40	14	12	31	1.84
301749--301779	16	1.9	16	93	0	53	25	9	12	51	1.70
304613--304656	20	2.3	20	84	7	56	56	0	13	29	1.38
308988--309035	24	2.0	24	100	0	96	29	12	29	29	1.93
309452--309493	22	1.9	22	100	0	84	9	23	47	19	1.78
309502--309558	19	3.0	20	80	10	57	29	31	26	12	1.92
309501--309558	10	6.1	9	74	9	53	29	31	25	13	1.94
316691--316759	5	13.8	5	77	11	70	5	20	52	21	1.67
316685--316731	22	2.1	22	92	0	76	12	23	44	19	1.85
316723--316758	18	1.9	19	94	5	65	0	16	58	25	1.38
316780--316825	19	2.3	20	85	10	60	39	30	19	10	1.86
316780--316845	29	2.2	30	81	2	80	37	27	21	13	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
324356--324407	12	4.3	12	72	18	54	46	0	0	53	1.00
325100--325159	31	1.9	31	93	6	104	46	6	5	41	1.52
350705--350765	32	2.0	31	84	12	81	50	4	1	42	1.33
352002--352031	6	5.0	6	91	0	51	53	16	0	30	1.44
356251--356302	21	2.5	21	93	0	86	53	0	0	46	1.00
356206--356302	15	6.6	15	66	15	60	54	0	1	44	1.06
359166--360005	211	4.0	211	87	3	1210	30	11	20	36	1.89
359174--360005	421	2.0	421	88	4	1264	30	11	20	36	1.89
364545--364591	20	2.2	22	81	11	62	21	6	19	53	1.67
367061--367088	14	2.0	14	100	0	56	28	21	35	14	1.92
383335--383448	60	1.9	60	82	7	142	42	7	20	29	1.80
386697--386734	20	1.9	20	94	0	67	44	5	23	26	1.74
386697--386740	20	2.3	19	88	7	63	45	4	25	25	1.72
388796--388839	21	2.0	22	91	8	72	31	13	4	50	1.62
393211--393258	17	2.8	17	83	3	60	37	2	2	58	1.22
400235--400280	2	23.0	2	100	0	92	50	0	0	50	1.00
400323--400396	29	2.6	29	78	6	78	45	6	8	39	1.60
400650--400701	27	1.9	27	84	0	68	40	21	7	30	1.81
401293--401353	25	2.5	25	86	5	81	57	3	0	39	1.15
406191--406232	2	21.0	2	100	0	84	50	0	0	50	1.00
411080--411123	2	22.0	2	100	0	88	50	0	0	50	1.00
418138--418179	21	2.0	21	86	9	59	28	4	7	59	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
425176--425750	302	1.9	302	83	5	759	38	9	11	41	1.72
445553--445594	20	2.2	19	84	12	59	26	28	2	42	1.67
448718--448818	30	3.4	30	86	2	141	16	10	31	40	1.83
453715--453901	31	6.0	31	95	2	315	19	19	22	37	1.94
454364--454406	21	2.0	21	82	8	52	32	4	13	48	1.63
458117--458272	31	5.0	31	94	1	260	20	19	22	37	1.94
458735--458777	21	2.0	21	82	8	52	32	4	13	48	1.63
461373--461455	39	2.1	39	95	0	148	48	1	15	34	1.53
469646--470596	390	2.4	390	90	3	1456	33	22	19	24	1.97
476119--476182	31	2.1	31	88	5	94	57	6	4	31	1.44
476249--476339	3	31.0	3	95	2	159	32	31	0	35	1.58
481278--481325	24	1.9	25	83	8	62	29	0	4	66	1.10
518246--518306	21	3.0	21	83	9	72	32	24	13	29	1.93
518248--518384	20	6.8	20	76	9	100	29	24	12	32	1.92
518248--518392	60	2.4	60	78	10	161	29	24	12	33	1.92
521645--521680	18	2.0	18	94	0	63	58	25	0	16	1.38
523405--523505	21	4.8	21	90	3	141	22	17	35	23	1.95
523909--523979	21	3.4	21	96	0	124	33	32	14	19	1.92
524094--524192	42	2.4	42	80	0	108	20	17	34	28	1.95
525945--525989	23	1.9	24	95	4	83	20	17	46	15	1.84
526137--526185	20	2.5	20	93	0	80	20	12	22	44	1.84
526184--526242	20	3.0	20	82	0	73	27	16	16	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
526175--526250	40	1.9	40	81	5	91	30	15	15	38	1.89
529632--529658	14	1.9	14	100	0	54	33	0	0	66	0.92
531505--531531	8	3.4	8	100	0	54	11	25	0	62	1.28
531599--532015	206	2.0	208	99	0	820	32	32	12	22	1.92
534445--534474	2	15.5	2	93	6	53	50	0	0	50	1.00
538017--538046	2	15.0	2	100	0	60	50	0	0	50	1.00
546811--546855	20	2.3	21	81	14	60	60	0	0	40	0.97
549631--549682	20	2.6	20	90	0	86	40	19	19	21	1.92
549651--549784	61	2.2	61	83	2	171	33	24	19	22	1.97
549692--549798	20	5.3	20	80	10	128	30	26	18	24	1.98

Tables:   1   2   3   4