genome.fa.s2273.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002273.1 Hibiscus syriacus cultivar Beakdansim tig00004620_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  802197

Tables:   1   2   3   4   

This is table  3  of  4  ( 367 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
549671--549798	61	2.1	61	89	0	193	31	26	19	22	1.98
549692--549821	61	2.1	60	81	5	145	31	26	16	25	1.97
550618--550671	24	2.2	24	93	0	90	20	18	20	40	1.91
550861--550897	14	2.6	14	91	4	56	51	21	21	5	1.68
552931--552961	12	2.6	12	94	0	53	48	29	6	16	1.70
553139--553360	20	11.7	20	75	11	198	37	22	18	20	1.94
553139--553340	54	3.6	54	81	4	215	38	22	18	19	1.93
553258--553394	34	3.9	34	75	11	121	37	22	20	18	1.94
553144--553372	74	3.1	74	77	4	264	39	22	18	19	1.93
553495--553574	30	2.4	34	76	20	96	55	13	2	28	1.52
553510--553575	30	2.2	30	94	0	114	54	12	1	31	1.46
554749--554777	14	2.1	14	100	0	58	55	13	10	20	1.68
554964--555070	21	5.1	21	75	0	106	22	18	38	20	1.94
554966--555075	42	2.6	42	81	2	132	23	19	38	19	1.93
555553--555590	20	1.9	20	100	0	76	55	23	5	15	1.61
555687--555794	20	5.4	19	85	4	117	19	20	25	35	1.96
555646--555786	60	2.5	54	79	11	158	20	19	22	36	1.95
555913--555973	29	2.0	31	90	6	99	52	16	9	21	1.72
557762--557817	20	2.8	20	91	0	85	50	21	16	12	1.78
558416--558485	20	3.5	20	75	11	61	25	21	22	30	1.99
558436--558506	21	3.5	20	71	11	63	19	21	25	33	1.97
558416--558506	41	2.2	41	90	0	137	23	20	24	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
558614--558668	19	2.9	19	97	0	101	27	16	23	32	1.96
565962--566174	103	2.1	103	95	0	381	25	13	23	37	1.91
566193--566258	23	2.9	23	88	0	87	22	28	22	25	1.99
566431--566483	16	3.2	16	72	5	52	30	1	26	41	1.66
574033--574146	57	2.0	57	100	0	228	33	21	19	26	1.97
579240--579286	24	1.9	25	86	4	69	76	2	10	10	1.10
585470--585498	4	7.2	4	100	0	58	24	24	0	51	1.48
592134--592185	9	5.9	9	76	10	54	76	1	9	11	1.09
592163--592224	28	2.2	28	82	5	72	72	0	11	16	1.12
592224--592315	35	2.6	35	77	19	86	71	2	7	18	1.20
593462--593486	13	1.9	13	100	0	50	76	0	8	16	1.02
593535--593584	25	2.0	25	84	7	66	54	6	0	40	1.25
593543--593639	36	2.6	37	83	8	117	47	4	1	47	1.28
593556--593831	102	2.7	98	75	11	243	44	5	3	46	1.42
593632--593893	36	7.2	36	73	17	186	45	6	4	44	1.49
593704--593768	29	2.2	30	83	8	89	44	7	4	43	1.53
593678--593809	64	2.0	67	86	4	189	44	7	3	43	1.50
593743--593906	38	4.2	38	76	18	137	45	6	3	44	1.45
593838--593932	38	2.5	38	83	8	113	47	10	3	38	1.54
594513--595759	165	7.6	162	82	4	1349	25	19	24	30	1.98
594513--595759	164	7.6	164	82	3	1350	25	19	24	30	1.98
599172--599217	19	2.4	19	100	0	92	67	10	10	10	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
602326--602439	38	3.1	35	82	10	95	49	4	0	45	1.28
602403--602468	29	2.3	29	86	0	87	45	3	3	48	1.33
602432--602540	35	3.1	36	79	11	109	44	6	5	44	1.53
602536--602649	36	3.0	36	80	5	111	49	2	2	45	1.30
602637--602687	26	2.0	26	88	0	75	43	5	1	49	1.38
602447--602713	103	2.6	99	76	11	258	46	5	3	44	1.46
605743--605829	2	44.5	2	85	4	106	0	58	0	41	0.98
605745--605825	23	3.6	23	86	6	112	0	59	0	40	0.98
605829--605864	2	18.0	2	94	0	63	52	47	0	0	1.00
606319--606396	2	39.0	2	100	0	156	50	0	0	50	1.00
611803--612252	192	2.3	191	83	6	561	27	12	20	39	1.88
618816--618852	16	2.3	16	90	0	56	51	13	16	18	1.76
629229--629265	16	2.3	16	90	0	56	51	13	16	18	1.76
655152--655176	12	2.1	12	100	0	50	60	16	16	8	1.58
658633--659561	463	2.0	463	100	0	1858	31	27	12	28	1.93
673985--674071	43	2.0	43	97	0	165	14	22	19	42	1.88
674499--675895	566	2.5	558	90	4	2116	37	14	12	34	1.85
675903--675948	23	2.0	23	100	0	92	21	13	30	34	1.91
677883--677921	18	2.2	17	86	9	51	43	0	0	56	0.99
677920--677959	12	3.3	12	78	0	53	37	0	0	62	0.95
685911--685974	26	2.5	26	89	0	101	53	0	7	39	1.30
686194--686246	21	2.5	21	81	6	72	20	26	18	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
686276--686390	20	5.7	20	80	6	106	33	25	17	24	1.96
686273--686406	41	3.3	41	81	6	164	35	23	16	23	1.95
686577--686620	22	2.0	22	95	0	79	20	45	15	18	1.85
686883--686941	20	3.0	20	82	0	64	13	18	23	44	1.86
688261--688308	18	2.7	18	93	0	87	27	45	12	14	1.81
688849--688915	20	3.4	20	81	2	73	38	23	22	14	1.92
688849--688951	19	5.6	19	75	14	72	41	23	21	13	1.88
688963--689049	20	4.4	20	88	1	122	14	24	24	36	1.93
689421--689504	41	2.0	42	86	2	116	22	41	14	21	1.89
690915--690953	14	2.8	14	84	0	51	35	0	17	46	1.49
691093--691157	19	3.7	19	84	15	95	46	18	21	13	1.84
691164--691217	20	2.7	20	97	0	99	12	22	25	38	1.90
692055--692099	21	2.1	21	83	0	54	31	31	24	13	1.93
693011--693096	31	2.7	31	96	1	154	29	18	18	33	1.95
692994--693115	31	3.9	31	87	7	142	30	18	18	31	1.96
693011--693131	62	1.9	63	80	8	140	30	18	19	32	1.95
693110--693292	30	6.1	30	96	0	323	22	22	24	30	1.99
694458--694526	20	3.5	20	89	0	102	24	20	27	27	1.99
694515--694563	20	2.4	21	86	3	64	20	22	16	40	1.91
697152--697185	2	17.0	2	100	0	68	50	0	0	50	1.00
702967--703000	2	17.0	2	100	0	68	50	0	0	50	1.00
705649--705679	16	1.9	16	93	0	53	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
710521--710562	22	1.9	22	85	0	57	57	9	7	26	1.56
715251--715361	6	18.5	6	100	0	222	0	49	0	50	1.00
716234--716290	24	2.4	24	90	0	87	17	28	24	29	1.97
723036--723063	14	2.0	14	100	0	56	0	14	0	85	0.59
732006--732064	20	2.9	21	77	7	68	18	25	23	32	1.97
732056--732094	19	2.1	19	90	0	60	23	25	25	25	2.00
732093--732136	18	2.4	18	92	0	70	22	54	20	2	1.56
738855--738902	15	3.2	15	87	0	69	8	14	66	10	1.43
740940--741033	46	2.0	46	100	0	188	47	10	13	27	1.76
745925--745985	25	2.4	25	83	2	68	54	9	1	34	1.44
745912--745985	13	5.8	12	75	15	51	54	8	1	36	1.39
745934--745985	25	2.0	26	85	3	70	55	11	1	30	1.46
750470--750545	16	4.8	16	75	0	71	48	26	14	10	1.76
750470--750545	32	2.4	32	88	4	109	48	26	14	10	1.76
750611--750651	17	2.5	16	84	7	55	58	4	0	36	1.20
753417--753539	62	2.0	62	95	0	219	45	28	7	18	1.76
756055--756310	128	2.0	128	97	0	485	24	23	16	35	1.95
757452--757574	66	1.9	63	83	9	158	34	19	20	25	1.96
758166--758265	22	4.5	22	94	0	164	15	26	30	29	1.95
760988--761142	50	3.1	50	85	0	204	18	32	32	16	1.93
761986--762013	2	14.0	2	100	0	56	50	0	0	50	1.00
762843--762882	20	2.1	19	90	4	62	30	22	5	42	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
766776--766856	21	3.8	21	77	18	69	14	23	38	23	1.92
766821--766858	20	1.9	20	88	0	58	13	26	36	23	1.91
770670--770709	21	1.9	21	85	10	55	35	10	2	52	1.48
777659--777690	15	2.1	15	94	0	55	62	0	0	37	0.95
789739--789774	15	2.4	15	90	0	54	58	2	0	38	1.13
791901--791973	31	2.4	31	90	0	110	31	27	15	26	1.95
793535--793576	20	2.2	19	86	4	57	64	2	0	33	1.07
794986--795032	3	16.0	3	87	12	71	36	0	0	63	0.94
794985--795029	22	2.1	21	95	4	81	37	0	0	62	0.96
795183--795330	45	3.3	45	92	1	242	35	18	20	24	1.95

Tables:   1   2   3   4