Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002279.1 Hibiscus syriacus cultivar Beakdansim tig00004636_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72505

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1996--2089
41
2.3
42
86
1
127
56
5
8
29
1.51
14393--14446
19
2.8
19
82
2
72
25
35
16
22
1.95
14845--14915
34
2.1
33
82
7
81
35
15
26
22
1.94
15879--15918
15
2.7
15
96
3
73
52
0
42
5
1.23
18662--18691
2
15.0
2
100
0
60
50
0
0
50
1.00
20147--20179
2
16.5
2
100
0
66
51
0
0
48
1.00
20336--20377
13
3.2
13
86
0
57
35
14
21
28
1.92
21781--21823
21
2.0
23
81
9
54
23
23
23
30
1.99
24605--24665
29
2.1
29
87
0
86
34
9
19
36
1.85
24748--24797
18
2.9
18
79
8
68
56
0
0
44
0.99
24779--24805
13
2.1
13
100
0
54
48
0
0
51
1.00
25418--25542
31
4.1
31
82
2
153
48
16
11
24
1.79
25419--25537
61
1.9
62
86
1
168
47
15
11
25
1.80
29229--29325
47
2.1
47
100
0
194
54
20
2
22
1.55
29318--29359
21
2.0
21
95
4
77
54
23
11
9
1.66
32646--33130
230
2.1
230
95
1
866
45
7
7
38
1.62
33179--33225
20
2.4
19
89
10
76
55
10
17
17
1.69
34076--34131
23
2.4
23
90
0
94
37
3
19
39
1.69
34548--34611
23
2.8
23
90
0
101
35
4
21
37
1.75
34964--35008
22
2.0
22
86
0
63
40
8
11
40
1.72
35026--35089
23
2.8
23
88
4
94
35
4
20
39
1.73
35509--35572
23
2.8
23
92
0
110
37
4
20
37
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34011--37421
483
7.1
482
97
0
6372
41
7
11
40
1.68
35992--36055
23
2.8
23
90
0
110
37
3
18
40
1.67
36474--36537
23
2.8
23
90
0
101
35
4
21
37
1.75
34011--37421
965
3.5
964
96
0
6392
41
7
11
40
1.68
36894--36938
22
2.0
22
86
0
63
40
8
11
40
1.72
36956--37019
23
2.8
23
90
0
101
35
4
21
37
1.75
40024--40103
29
2.8
29
96
0
142
36
18
15
30
1.92
45384--45546
81
2.0
81
96
0
299
30
11
22
36
1.89
45697--45736
12
3.4
12
79
6
55
67
0
10
22
1.20
46283--46375
30
3.1
30
76
14
86
53
2
0
44
1.12
55988--56017
15
2.0
15
100
0
60
33
13
20
33
1.91
71282--71307
2
13.0
2
100
0
52
50
0
0
50
1.00

Tables:   1

The End!