Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000232.1 Hibiscus syriacus cultivar Beakdansim tig00000402_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84878

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
438--1107
112
6.0
114
88
6
948
30
20
15
33
1.93
438--1107
223
3.0
226
88
7
969
30
20
15
33
1.93
468--1103
337
1.9
332
90
5
1014
30
20
15
33
1.94
7384--7420
18
2.2
17
86
13
51
51
0
16
32
1.45
7576--7614
19
2.1
18
90
4
60
66
0
0
33
0.92
7579--7617
10
4.0
10
80
6
53
69
0
0
30
0.89
7827--7852
2
13.0
2
100
0
52
50
0
0
50
1.00
8969--9012
22
2.0
23
90
4
72
70
4
0
25
1.06
11315--11454
34
3.5
42
79
16
136
26
3
17
52
1.60
11367--11440
34
2.2
34
100
0
148
25
5
17
51
1.67
12537--12583
22
2.0
25
88
12
73
55
0
0
44
0.99
19207--19247
21
2.0
21
85
0
55
31
14
21
31
1.94
19245--19298
23
2.3
23
96
0
99
20
20
27
31
1.97
20327--20359
12
2.7
12
95
4
57
30
45
15
9
1.77
20363--20461
49
2.0
50
84
9
134
53
1
0
45
1.07
20979--21024
19
2.4
18
89
7
65
26
19
26
28
1.99
24861--24912
21
2.5
21
96
0
95
30
13
26
28
1.94
25587--25647
23
2.7
23
89
0
95
24
19
24
31
1.98
26442--26515
3
24.7
3
79
5
78
60
1
4
33
1.24
27380--27472
20
4.8
19
81
5
98
36
21
15
26
1.93
27393--27472
20
4.2
19
82
6
99
36
21
16
26
1.94
27393--27465
37
1.9
38
86
5
103
36
21
15
26
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28290--28329
16
2.5
16
100
0
80
27
0
5
67
1.11
30144--30227
42
2.0
42
100
0
168
33
14
14
38
1.86
30649--33205
4
640.0
4
78
1
1163
0
15
50
34
1.47
30650--33502
6
474.2
6
74
10
1165
0
15
50
33
1.48
30784--33516
4
707.8
4
72
11
434
0
16
50
32
1.49
83301--84256
243
4.0
241
81
3
1001
35
15
15
33
1.89
83308--84218
483
1.9
482
84
4
1235
35
15
15
33
1.89
84163--84255
42
2.2
41
83
5
107
30
18
21
30
1.97
84264--84878
4
158.0
4
90
8
988
25
0
25
49
1.51

Tables:   1

The End!