Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002349.1 Hibiscus syriacus cultivar Beakdansim tig00004791_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57912

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12577--12635
31
1.9
31
92
0
100
40
6
10
42
1.65
12662--12710
22
2.2
22
85
3
62
55
12
0
32
1.37
12650--13969
54
24.4
54
70
16
611
52
11
0
35
1.40
12716--12790
22
3.2
23
71
17
73
54
10
0
34
1.35
12794--12838
22
2.0
22
100
0
90
48
8
0
42
1.34
12792--12844
22
2.4
22
90
6
81
52
7
0
39
1.30
12839--12891
14
3.5
14
72
18
52
56
5
0
37
1.23
12992--13034
22
2.0
22
100
0
86
51
13
0
34
1.42
12994--13042
22
2.2
22
88
3
71
55
14
0
30
1.40
13036--13079
22
2.0
22
82
8
54
54
4
0
40
1.21
12880--13926
188
5.6
185
90
4
1395
52
12
0
34
1.42
13046--13088
22
2.0
22
90
0
68
51
9
0
39
1.34
13100--13144
22
2.0
22
100
0
90
53
8
0
37
1.32
13098--13150
22
2.4
22
90
6
81
56
7
0
35
1.28
13156--13230
22
3.2
22
75
14
69
54
14
0
30
1.41
13234--13276
22
2.0
22
100
0
86
51
13
0
34
1.42
12745--13939
242
4.9
242
84
8
1152
52
11
0
35
1.41
13236--13284
22
2.2
22
88
3
71
55
14
0
30
1.40
13292--13339
22
2.2
22
81
7
53
52
12
2
33
1.51
13422--13464
22
2.0
22
100
0
86
51
13
0
34
1.42
13424--13472
22
2.2
22
88
3
71
55
14
0
30
1.40
13478--13526
22
2.2
22
85
3
62
55
12
0
32
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13610--13652
22
2.0
22
100
0
86
51
13
0
34
1.42
13612--13660
22
2.2
22
88
3
71
55
14
0
30
1.40
12650--13680
134
7.6
133
73
17
701
52
11
0
35
1.41
13662--13714
22
2.4
22
84
12
65
52
7
0
39
1.30
13718--13760
22
2.0
22
95
0
77
53
11
0
34
1.37
13720--13768
22
2.2
22
85
3
62
57
12
0
30
1.36
13669--13922
134
1.9
134
93
1
438
52
12
0
35
1.39
13820--13954
32
4.4
32
75
22
137
51
9
0
38
1.35
13854--13902
22
2.2
22
85
3
62
55
12
0
32
1.37
12665--13954
166
7.9
164
70
20
505
52
11
0
35
1.40
13925--13997
15
5.0
15
78
6
87
50
2
0
46
1.15
13950--14020
28
2.6
28
95
2
126
50
4
0
45
1.21
14767--14818
23
2.3
23
86
0
68
44
0
0
55
0.99
14778--14837
17
3.7
17
72
17
56
46
0
0
53
1.00
14755--14906
55
2.7
58
75
17
144
44
0
0
54
1.09
14860--14913
13
3.9
14
73
22
51
40
1
0
57
1.09
14821--14907
29
3.1
27
80
8
102
44
0
1
54
1.07
14811--14906
29
3.5
26
77
13
95
43
0
1
55
1.06
18311--18361
17
3.1
17
80
2
50
52
3
0
43
1.19
18524--18580
28
2.1
27
83
9
71
57
7
0
35
1.26
34508--34545
20
1.9
20
84
10
51
2
34
0
63
1.09
35577--35889
148
2.1
148
92
3
515
26
17
21
34
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41928--41970
21
2.0
21
86
0
59
32
30
23
13
1.93
42511--42824
148
2.1
149
94
2
544
26
17
21
34
1.96
42792--42836
23
2.0
23
86
0
63
20
26
26
26
1.99
46102--46198
36
2.6
37
93
3
126
36
4
5
54
1.42
46102--46217
38
3.1
38
92
2
182
36
3
5
55
1.39
55945--56010
35
2.0
33
83
13
84
42
4
3
50
1.38

Tables:   1

The End!