Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000235.1 Hibiscus syriacus cultivar Beakdansim tig00000405_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  589249

Tables:   1   2   3   

This is table  3  of  3  ( 271 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
530189--530374
84
2.2
84
86
0
255
31
25
21
22
1.98
530189--530399
84
2.5
84
83
0
224
32
25
20
22
1.98
530189--530436
84
2.9
85
81
3
205
33
23
20
22
1.97
530976--531037
3
19.3
3
84
12
63
35
1
0
62
1.05
530976--531037
27
2.4
26
84
7
81
35
1
0
62
1.05
533739--533848
51
2.2
51
88
3
159
28
31
25
14
1.95
534297--534471
98
1.8
95
83
6
235
35
9
0
54
1.38
534382--534619
30
7.8
30
75
8
158
35
8
0
55
1.34
536457--536527
21
3.3
21
72
14
65
64
0
2
32
1.08
536467--536701
12
19.8
12
74
18
97
56
2
0
40
1.17
536457--536699
22
10.9
21
68
22
99
57
2
0
39
1.16
536505--536701
2
105.5
2
75
20
187
54
2
0
42
1.13
536861--536917
29
2.0
29
85
0
78
45
1
7
45
1.40
541732--541820
8
11.1
8
77
4
63
35
25
3
34
1.73
543012--543406
43
9.2
43
83
4
426
32
20
22
24
1.98
543009--543389
128
3.0
127
80
6
446
33
20
22
24
1.97
545991--546375
41
9.4
41
82
3
346
35
19
17
26
1.94
545991--546375
123
3.1
124
80
9
405
35
19
17
26
1.94
547937--548025
32
2.8
32
81
5
101
26
26
29
16
1.97
557616--557660
19
2.4
19
88
0
72
37
17
20
24
1.93
561409--561570
63
2.6
63
79
4
166
33
22
19
24
1.97
561543--561624
35
2.3
35
97
0
155
29
21
28
20
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
572928--572997
31
2.3
30
85
7
95
42
15
10
31
1.80
572942--573000
31
1.9
31
96
0
109
42
13
10
33
1.78
572940--573006
31
2.2
30
88
0
98
40
16
8
34
1.80
574045--574171
31
4.1
31
93
0
209
31
24
20
23
1.98
574502--574563
31
2.0
31
96
0
115
50
17
3
29
1.62
575566--575595
10
3.0
10
100
0
60
70
0
30
0
0.88
576080--576151
31
2.4
31
85
2
92
36
13
9
40
1.78
582835--582887
20
2.5
21
76
14
56
39
18
15
26
1.90
582915--582954
19
2.1
19
100
0
80
30
20
22
27
1.98

Tables:   1   2   3

The End!