genome.fa.s2354.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002354.1 Hibiscus syriacus cultivar Beakdansim tig00004804_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93816

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9300--9569	133	2.0	133	98	0	522	30	13	17	38	1.88
13490--13566	37	2.1	37	85	4	102	48	1	3	46	1.28
13718--13764	20	2.3	20	100	0	94	21	23	8	46	1.78
13727--13771	20	2.2	20	92	0	72	22	28	8	40	1.84
23842--23873	13	2.6	13	90	9	50	65	0	0	34	0.93
27452--27498	7	6.7	7	100	0	94	25	29	29	14	1.95
27497--27568	17	4.8	15	84	8	71	12	22	44	20	1.85
27498--27546	13	3.8	13	91	2	82	12	22	46	18	1.82
34716--34762	7	6.7	7	100	0	94	25	29	29	14	1.95
34761--34832	17	4.8	15	84	8	71	12	22	44	20	1.85
34762--34810	13	3.8	13	91	2	82	12	22	46	18	1.82
36374--36420	17	2.8	17	87	6	69	14	12	19	53	1.73
36884--36924	11	3.7	11	78	21	50	73	7	2	17	1.17
41360--41432	22	3.4	22	72	16	71	53	0	1	45	1.09
41354--41461	42	2.6	42	81	15	127	51	0	2	44	1.22
41440--41476	15	2.3	17	86	13	60	45	0	0	54	1.00
41450--41486	19	2.0	19	94	5	67	43	0	0	56	0.99
41444--41486	18	2.6	16	76	16	52	46	0	0	53	1.00
48482--48715	31	7.5	31	96	0	423	39	21	19	19	1.92
49622--49676	20	2.7	21	88	2	85	20	23	25	30	1.98
50870--50910	21	2.0	21	95	0	73	24	24	24	26	2.00
50933--50973	21	2.0	21	90	0	64	29	26	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51261--51310	2	25.0	2	100	0	100	50	0	0	50	1.00
51646--51743	37	2.6	37	90	0	160	36	20	16	26	1.93
52046--52090	2	22.0	2	95	4	81	48	2	0	48	1.13
54374--54442	35	2.0	35	85	5	95	27	18	20	33	1.96
74997--75066	2	35.0	2	100	0	140	50	0	0	50	1.00
79030--79089	25	2.3	26	80	16	70	6	15	10	68	1.38
81365--81389	7	3.6	7	100	0	50	60	0	40	0	0.97
82346--82397	20	2.5	21	84	3	70	38	19	23	19	1.93
82383--82520	41	3.4	41	83	6	163	34	25	18	21	1.96
82386--82500	20	5.7	20	84	6	133	31	26	19	22	1.98
83462--83486	12	2.1	12	100	0	50	72	0	28	0	0.86
85781--85869	19	5.2	19	67	25	81	43	19	22	14	1.87
85781--85904	33	3.8	33	88	4	187	43	20	23	12	1.86
85781--85911	66	2.0	66	95	0	235	42	19	22	14	1.88
85904--85945	19	2.2	19	91	0	66	16	19	23	40	1.91
85913--85979	19	3.8	19	71	18	72	11	23	20	43	1.85
86080--86114	14	2.4	14	90	4	52	45	17	0	37	1.48
86088--86116	14	2.1	14	100	0	58	37	20	0	41	1.53
87469--87535	21	3.2	21	68	4	55	19	20	35	23	1.95
87809--87993	91	2.0	90	88	6	273	47	17	13	21	1.82
89680--89820	19	7.8	19	69	17	86	43	19	24	13	1.86
89705--89792	33	2.6	33	94	1	149	38	21	27	12	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89821--89865	19	2.4	19	88	0	63	8	13	26	51	1.70
90410--90462	20	2.7	20	93	0	88	26	20	28	24	1.99
90471--90524	20	2.7	20	97	0	99	25	18	24	31	1.97
90411--90527	61	1.9	61	85	0	162	23	17	24	33	1.97
90411--90545	61	2.2	61	81	2	155	22	20	24	32	1.98
90595--90635	21	2.0	21	85	0	55	34	29	17	19	1.94
93013--93071	31	1.9	31	85	0	82	44	6	6	42	1.57
93265--93307	18	2.4	19	84	11	63	51	4	2	41	1.35

Tables:   1

The End!