genome.fa.s2372.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002372.1 Hibiscus syriacus cultivar Beakdansim tig00004845_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  133374

Tables:   1   2   

This is table  1  of  2  ( 152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5242--5275	15	2.2	15	89	5	50	32	0	0	67	0.91
8471--8514	7	6.4	7	92	5	72	18	0	0	81	0.68
8463--8509	21	2.3	20	81	3	58	23	0	0	76	0.78
8474--8514	13	3.1	13	92	3	64	17	0	0	82	0.66
11704--11756	21	2.5	21	81	0	61	18	26	20	33	1.96
11746--11938	20	9.6	20	89	4	282	38	21	20	19	1.93
12735--12788	24	2.2	24	93	0	90	20	18	20	40	1.91
15185--15292	20	5.7	20	75	16	122	35	24	22	18	1.96
15288--15359	33	2.1	34	89	2	110	47	19	20	12	1.82
15264--15367	33	3.1	32	78	9	102	44	21	21	13	1.86
15495--15531	14	2.6	14	86	0	56	48	21	0	29	1.50
16870--16977	42	2.6	42	75	8	96	24	16	37	22	1.94
17461--17562	20	5.4	20	72	17	76	42	22	17	17	1.89
17607--17790	20	9.5	20	86	7	245	21	19	20	39	1.93
17586--17790	40	5.4	40	81	10	245	20	20	20	40	1.92
17625--17783	54	2.8	57	87	5	216	20	20	19	40	1.92
18172--18201	6	5.0	6	91	0	51	16	3	63	16	1.44
19674--19713	20	2.0	20	100	0	80	55	20	15	10	1.68
19789--19835	20	2.3	20	92	0	76	23	19	21	36	1.95
20169--20230	18	3.0	22	69	26	62	17	16	38	27	1.91
20427--20502	20	3.8	20	91	1	116	21	19	19	39	1.93
20489--20541	21	2.5	21	90	0	79	33	16	24	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24719--24785	27	2.4	28	92	2	118	44	35	7	11	1.70
25653--25806	43	3.7	41	81	6	159	22	16	24	36	1.94
25674--25788	22	5.4	22	70	8	94	20	16	25	37	1.93
25674--25806	41	3.2	41	85	4	194	21	17	24	37	1.94
26403--26445	6	7.5	6	92	2	54	4	16	48	30	1.66
26528--26647	19	6.2	19	85	5	168	44	19	16	20	1.87
26687--26729	21	2.0	21	100	0	86	18	25	18	37	1.94
26691--26736	21	2.2	21	88	0	65	23	26	19	30	1.98
26910--26955	20	2.2	22	92	7	78	58	4	0	36	1.18
40284--40328	23	2.0	22	86	4	63	48	0	0	51	1.00
43163--43200	20	1.9	20	94	0	67	26	5	28	39	1.78
44274--44669	131	3.0	132	88	1	598	31	18	23	25	1.98
49058--49099	16	2.6	17	81	7	52	19	9	7	64	1.46
51144--51301	21	7.8	20	72	7	86	38	25	17	18	1.92
51268--51422	40	3.8	40	82	4	186	37	26	18	18	1.93
51268--51421	20	7.7	20	80	7	168	37	26	18	18	1.93
51804--51874	33	2.2	33	86	0	97	12	22	15	49	1.78
51954--52063	21	5.8	20	74	17	108	45	18	24	11	1.83
51947--52086	33	3.9	38	87	10	147	45	18	25	10	1.81
52014--52070	14	3.7	14	75	20	60	43	22	24	8	1.81
52006--52086	33	2.5	33	100	0	162	46	19	23	9	1.80
52093--52241	33	4.5	33	99	0	289	11	21	20	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52111--52233	14	7.7	14	66	24	57	11	21	21	44	1.84
53940--54129	93	2.1	92	96	1	353	23	12	18	45	1.83
54177--54305	19	7.3	19	75	17	125	45	28	17	8	1.77
54213--54305	33	2.8	32	91	4	150	46	27	18	7	1.76
54177--54305	52	2.5	52	74	14	140	45	28	17	8	1.77
54301--54421	19	6.6	19	80	10	135	11	19	23	45	1.83
54848--54910	21	3.0	21	70	9	65	23	36	19	20	1.95
56316--56351	14	2.6	14	95	0	63	33	0	22	44	1.53
56458--56555	19	5.4	19	84	13	143	45	17	22	14	1.84
56458--56574	53	2.2	53	96	1	218	43	17	24	13	1.86
56564--56733	19	9.7	19	74	19	163	14	21	18	45	1.84
56570--56747	72	2.6	68	83	11	222	13	21	18	46	1.83
56570--56747	33	5.2	33	83	10	232	13	21	18	46	1.83
56564--56755	105	1.8	104	87	3	287	14	21	18	45	1.84
59176--59222	24	2.0	24	87	8	69	38	21	14	25	1.92
59904--60213	20	15.5	20	87	1	352	20	17	24	37	1.94
60200--60282	21	4.0	21	73	6	78	25	16	24	33	1.96
60180--60278	42	2.4	43	77	11	100	21	18	23	37	1.94
75826--75877	21	2.5	21	81	12	54	32	7	36	23	1.83
83163--83200	20	2.0	19	90	10	60	47	10	23	18	1.79
83353--83383	15	2.1	15	93	0	53	54	0	0	45	0.99
88862--88893	3	10.7	3	100	0	64	0	34	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88969--89149	3	60.7	3	83	5	233	0	38	0	61	1.00
90342--90411	13	5.4	13	81	14	74	48	0	0	51	1.00
90363--90398	11	3.1	11	85	14	54	47	0	0	52	1.00
90370--90411	15	2.9	15	79	13	52	52	0	0	47	1.00
90356--90406	24	2.1	24	88	0	75	50	0	0	49	1.00
90525--90564	16	2.8	13	82	17	53	57	2	0	40	1.12
91254--91305	21	2.5	21	81	3	61	38	19	25	17	1.93
91291--91368	41	1.9	41	83	0	102	41	21	15	21	1.90
91336--91388	20	2.7	20	93	0	88	28	28	18	24	1.98
91577--91620	22	2.0	22	95	0	79	20	45	15	18	1.85
91885--91922	20	1.9	20	88	0	58	13	15	21	50	1.78
93237--93281	18	2.5	18	88	0	72	26	44	15	13	1.83
93763--93803	20	2.0	20	90	0	64	39	24	19	17	1.92
93807--93892	32	2.6	33	94	3	156	48	20	18	11	1.79
93807--93897	14	5.4	19	67	26	78	47	20	19	12	1.81
93909--93966	14	3.9	14	79	16	71	10	17	24	48	1.78
93904--93982	32	2.4	33	95	2	142	11	18	22	46	1.81
93967--94021	20	2.8	19	83	5	74	18	23	21	36	1.95
95886--95921	14	2.6	14	90	0	54	30	0	22	47	1.52
96007--96044	20	1.9	20	94	0	67	39	23	21	15	1.92
96039--96106	19	3.8	19	81	14	92	47	16	22	14	1.82
96094--96148	18	3.0	18	84	5	74	21	25	16	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96150--96205	20	2.8	20	100	0	112	16	25	25	33	1.95
96606--96704	33	3.0	33	89	1	144	39	26	23	11	1.88
96581--96765	19	10.1	19	75	14	165	44	22	21	11	1.85
96676--96765	39	2.3	38	92	1	144	47	22	18	11	1.80
96761--96846	19	4.5	19	92	2	136	9	16	24	50	1.74
96761--96846	39	2.2	38	91	2	136	9	16	24	50	1.74
97146--97204	22	2.7	22	72	0	64	20	18	38	22	1.93
97361--97413	20	2.7	20	93	0	88	26	20	28	24	1.99
97422--97475	20	2.7	20	94	0	90	27	18	22	31	1.97
97362--97496	61	2.2	61	80	5	148	23	20	23	32	1.98
97546--97586	21	2.0	21	85	0	55	34	31	17	17	1.93
99316--99394	34	2.3	34	95	0	140	31	11	31	25	1.91
100816--100868	21	2.5	21	78	6	63	20	24	18	35	1.95
100875--100972	21	4.7	21	98	0	187	38	16	23	21	1.92
100961--101075	20	5.7	20	82	6	124	33	26	19	21	1.97
100962--101095	41	3.3	41	84	4	173	33	25	18	22	1.97
100960--101095	61	2.2	61	78	8	143	34	25	18	22	1.96
101262--101305	22	2.0	22	95	0	79	20	45	15	18	1.85
101568--101626	20	3.0	20	87	0	73	15	18	22	44	1.87
101763--101817	25	2.2	24	78	15	58	20	9	18	52	1.71
102948--102995	18	2.7	18	93	0	87	27	45	12	14	1.81
103536--103581	20	2.3	20	84	0	56	36	23	19	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103547--103591	20	2.3	19	85	7	72	37	17	22	22	1.94
103555--103671	19	6.6	19	70	19	83	43	19	20	16	1.88
103591--103649	14	3.9	14	74	20	55	49	22	16	11	1.78
103575--103666	33	2.8	33	94	0	166	47	19	18	14	1.82
103678--103757	33	2.4	33	93	0	133	15	18	18	47	1.83
103699--103757	19	3.4	19	68	22	56	16	18	16	47	1.83
103742--103816	20	3.8	20	92	1	116	16	26	24	33	1.95
103787--103842	20	2.8	20	88	0	76	23	16	28	32	1.96
103743--103836	40	2.4	40	82	5	102	18	22	25	34	1.96
104187--104265	42	1.9	41	89	2	122	22	41	15	20	1.89

Tables:   1   2