genome.fa.s2372.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002372.1 Hibiscus syriacus cultivar Beakdansim tig00004845_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  133374

Tables:   1   2   

This is table  2  of  2  ( 152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104186--104274	41	2.1	43	83	8	121	23	40	15	20	1.91
105685--105723	14	2.8	14	84	0	51	35	0	17	46	1.49
105936--106002	34	2.0	34	90	0	107	14	25	20	38	1.91
106206--106282	20	3.8	20	92	0	109	28	19	27	24	1.99
106250--106327	41	1.9	41	86	0	111	23	16	23	37	1.94
106215--106323	20	5.4	20	82	6	112	25	18	26	29	1.98
106313--106364	20	2.5	20	81	3	59	21	21	17	40	1.91
106375--106467	20	4.7	20	87	0	105	26	25	18	29	1.98
106603--106643	12	3.6	12	77	9	50	19	39	7	34	1.80
107191--107244	24	2.2	24	86	0	72	24	16	18	40	1.90
107419--107443	12	2.1	12	100	0	50	72	0	28	0	0.86
109958--110024	21	3.2	21	68	4	55	19	20	35	23	1.95
109958--110080	42	2.9	41	78	7	104	23	17	36	21	1.95
110298--110481	92	2.0	91	87	11	270	47	17	12	22	1.81
112167--112286	20	6.7	19	70	20	89	44	20	22	12	1.85
112214--112269	14	3.6	14	74	21	58	39	25	25	10	1.87
112193--112286	33	2.8	33	95	1	161	41	23	23	11	1.87
112297--112378	33	2.5	33	88	6	112	12	20	21	45	1.84
112909--113020	20	5.6	20	81	4	127	22	20	19	37	1.94
112927--113020	41	2.3	40	87	1	125	21	21	18	39	1.93
112949--113083	41	3.3	42	78	7	134	28	20	20	31	1.97
113017--113076	20	2.9	21	82	5	77	41	18	21	18	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112934--113054	61	2.0	61	80	6	138	25	20	19	34	1.96
113010--113082	21	3.5	21	81	3	85	36	19	21	21	1.95
113398--113523	31	4.1	31	80	4	139	23	15	16	44	1.86
116943--116969	12	2.2	12	100	0	54	25	33	7	33	1.84
117023--117094	36	2.0	36	86	5	101	36	1	11	51	1.46
123322--123516	41	4.7	43	74	6	161	22	21	22	34	1.96
123322--123516	62	3.1	62	89	0	309	22	21	22	34	1.96
123609--123640	6	5.3	6	100	0	64	34	46	18	0	1.49
124341--124367	6	4.5	6	100	0	54	0	14	51	33	1.43
124465--124577	21	5.5	21	74	10	108	32	23	22	21	1.98

Tables:   1   2

The End!