genome.fa.s2376.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002376.1 Hibiscus syriacus cultivar Beakdansim tig00004854_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  137088

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8676--8817	9	15.4	9	68	22	57	75	0	13	11	1.05
8670--8757	15	5.8	14	79	12	61	71	0	14	13	1.14
8662--8817	60	2.6	61	77	9	167	75	0	14	10	1.06
8668--8808	7	19.9	7	73	22	75	73	0	14	11	1.09
8655--8823	16	11.0	16	71	15	72	75	0	13	11	1.06
10086--10157	37	2.0	36	94	2	126	36	20	22	20	1.96
10162--10493	51	6.3	51	77	12	260	30	14	23	31	1.95
10183--10529	162	2.1	161	87	4	504	30	14	24	30	1.95
10161--10527	55	6.9	53	77	13	321	30	14	23	31	1.95
14750--14829	21	3.7	22	80	9	85	17	25	35	22	1.95
14771--14831	20	2.9	21	87	7	79	18	26	34	21	1.96
20493--20550	22	2.6	22	94	0	98	15	25	36	22	1.94
21225--21271	18	2.6	18	82	0	58	80	0	8	10	0.89
21233--21283	16	3.1	16	80	11	50	78	0	5	15	0.93
22516--22580	16	4.4	14	71	19	51	70	0	4	24	1.06
22564--22620	25	2.4	23	80	11	62	54	5	3	36	1.40
22601--22671	14	5.4	14	69	17	53	52	4	0	43	1.20
22615--22658	23	1.9	23	95	0	79	52	2	0	45	1.13
22631--23001	40	9.3	39	77	15	293	47	4	3	43	1.41
22679--22734	28	2.0	30	86	10	82	50	3	5	41	1.43
22588--23079	38	12.6	40	74	16	347	47	5	3	43	1.42
23063--23093	2	16.0	2	93	6	55	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22583--23076	40	12.6	38	73	15	267	47	5	3	43	1.43
40542--40575	16	2.1	16	94	0	59	32	26	8	32	1.87
58115--58175	2	30.5	2	100	0	122	50	0	0	49	1.00
66358--66393	2	18.5	2	94	5	65	50	0	0	50	1.00
66783--66816	18	1.9	17	88	5	50	64	5	0	29	1.17
69669--69886	103	2.1	103	96	0	400	25	13	24	36	1.92
69903--69968	23	2.9	23	88	0	87	24	25	24	25	2.00
75480--75516	18	2.0	19	89	5	58	29	0	16	54	1.43
76468--76686	107	2.1	103	92	3	357	27	13	22	36	1.92
76706--76773	23	3.0	23	86	0	91	20	25	26	27	1.99
80342--80386	22	2.0	22	91	4	72	28	33	26	11	1.91
81676--81893	103	2.1	103	94	0	382	26	13	24	35	1.93
81910--81975	23	2.9	23	86	0	78	25	24	22	27	2.00
84425--84470	12	3.7	12	83	11	56	36	4	6	52	1.47
86202--86226	13	1.9	13	100	0	50	32	8	24	36	1.84
88271--88408	69	2.0	67	85	2	186	28	13	5	52	1.62
98447--98510	23	2.8	23	81	9	60	40	7	0	51	1.31
99137--99545	20	20.5	20	86	4	529	34	26	19	20	1.96
100219--100265	24	2.0	24	87	8	69	25	14	21	38	1.92
100440--100464	12	2.1	12	100	0	50	72	0	28	0	0.86
102769--103093	19	18.4	19	80	16	396	47	17	20	14	1.83
102769--103093	33	9.2	34	81	14	312	47	17	20	14	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102797--103115	52	6.0	52	92	4	541	46	16	21	14	1.83
103122--103223	19	5.6	19	85	12	151	14	23	17	44	1.86
103330--103366	14	2.6	14	91	0	65	45	21	0	32	1.52
103361--103433	12	6.0	12	67	20	53	57	16	1	24	1.47
103347--103419	38	1.9	38	97	0	137	53	16	1	28	1.51
105290--105346	14	3.7	14	77	20	60	45	22	21	10	1.82
105271--105363	33	2.8	33	95	0	168	47	21	20	10	1.80
105234--105368	19	7.6	19	75	16	119	46	22	19	11	1.81
105364--105492	19	7.3	19	73	17	116	9	17	27	45	1.78
105364--105455	33	2.8	33	93	3	150	7	18	28	45	1.76
105535--105913	93	4.1	93	98	1	744	46	18	12	22	1.83
105535--105913	185	2.0	185	98	1	742	46	18	12	22	1.83
107616--107705	14	5.7	14	74	23	81	42	23	25	8	1.83
107608--107722	33	3.5	33	95	0	212	45	20	24	9	1.81
107615--107727	19	6.8	18	72	23	88	43	22	24	9	1.83
107739--107793	14	3.6	14	73	21	56	9	25	23	41	1.83
107723--107793	33	2.2	33	94	0	124	8	22	25	43	1.81
107734--107815	33	2.5	33	89	2	119	9	25	21	42	1.84
107746--107834	20	4.8	20	72	19	75	12	24	19	43	1.85
107914--107984	33	2.2	33	92	0	115	47	18	22	11	1.80
108166--108220	22	2.5	22	81	0	74	20	16	40	23	1.91
108366--108559	20	9.6	20	82	5	221	19	19	25	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108366--108559	60	3.2	60	83	0	253	19	19	25	35	1.95
108552--108628	21	3.7	20	70	13	57	27	16	23	32	1.96
108614--108665	20	2.6	20	96	0	95	21	13	26	38	1.90
110091--110126	16	2.2	16	95	0	63	61	0	2	36	1.11
110562--110771	100	2.1	99	95	0	375	33	4	6	55	1.46
110801--110865	24	2.7	24	76	11	69	32	3	3	61	1.27
111668--111730	28	2.2	28	94	2	108	50	20	9	19	1.74
114384--114459	26	3.0	26	96	1	136	32	13	3	50	1.60
117005--117133	52	2.5	52	87	1	188	44	20	20	13	1.86
119421--119470	24	2.1	24	85	7	66	26	2	12	60	1.43
120355--120387	16	2.0	17	88	5	50	12	6	9	72	1.26
128357--128406	24	2.1	24	85	7	66	26	2	12	60	1.43
128834--128867	17	2.1	16	88	5	50	14	8	0	76	1.01

Tables:   1

The End!