genome.fa.s2410.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002410.1 Hibiscus syriacus cultivar Beakdansim tig00004929_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  198433

Tables:   1   2   

This is table  2  of  2  ( 172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106834--107181	171	2.0	172	91	0	563	30	14	26	29	1.95
107701--107734	17	2.0	17	94	0	59	35	11	14	38	1.83
108331--108371	21	1.9	22	85	5	57	26	19	19	34	1.96
117221--117263	18	2.4	18	96	0	77	11	23	0	65	1.25
125340--125378	13	3.0	14	85	14	57	66	5	5	23	1.32
125918--125977	21	2.9	21	84	0	84	18	25	33	23	1.97
126998--127027	2	15.0	2	100	0	60	50	0	0	50	1.00
128144--128202	26	2.3	26	81	0	73	67	1	3	27	1.16
128144--128209	26	2.5	26	78	4	71	69	1	3	25	1.11
128191--128251	30	2.0	30	96	0	113	55	6	1	36	1.36
133146--133215	36	1.9	36	85	0	95	35	21	27	15	1.94
133688--133725	18	2.1	18	90	0	58	10	10	42	36	1.74
140840--140880	8	5.2	8	82	5	57	34	0	29	36	1.58
140963--142076	128	8.7	128	94	1	1959	21	24	21	32	1.98
142190--142232	22	1.9	22	85	4	59	44	0	20	34	1.52
142441--142513	34	2.1	34	89	0	110	36	4	4	54	1.38
142472--142542	28	2.5	27	84	8	88	38	1	2	57	1.22
143061--143121	21	2.9	21	80	0	68	22	22	34	19	1.97
144630--144717	10	9.1	10	74	12	85	19	23	29	27	1.98
144630--144719	19	4.7	19	89	6	119	18	25	28	26	1.98
144713--144770	17	3.4	17	97	0	107	17	43	24	15	1.87
144760--144789	7	4.4	7	91	8	53	16	30	30	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144760--144785	13	2.0	13	100	0	52	15	30	30	23	1.95
145659--145782	63	2.0	63	82	9	155	16	27	29	26	1.97
145659--145782	31	4.0	32	72	12	80	16	27	29	26	1.97
151992--152060	10	7.1	10	73	12	63	18	24	30	26	1.98
151992--152062	19	3.7	19	88	1	97	18	26	29	25	1.98
152056--152113	17	3.4	17	92	0	98	17	41	24	17	1.90
152103--152145	7	6.4	7	84	10	63	18	30	27	23	1.98
152103--152141	13	3.0	13	96	0	69	17	30	28	23	1.97
152103--152145	20	2.2	20	87	8	61	18	30	27	23	1.98
153014--153137	63	2.0	63	82	9	155	16	27	29	26	1.97
153014--153137	31	4.0	32	72	12	80	16	27	29	26	1.97
154692--154780	34	2.7	31	79	6	88	58	2	0	39	1.11
154692--154771	34	2.4	33	81	8	92	60	1	0	38	1.05
159002--159026	12	2.1	12	100	0	50	76	0	0	24	0.80
160108--160132	2	12.5	2	100	0	50	48	0	0	52	1.00
160796--160889	41	2.3	42	92	1	154	18	12	19	50	1.78
161120--161186	22	3.0	22	84	2	80	52	0	0	47	1.00
161131--161292	27	5.9	27	70	20	81	48	0	1	50	1.08
161153--161226	23	3.0	23	75	14	67	51	0	1	47	1.09
161120--161308	80	2.4	80	78	11	201	48	0	1	50	1.07
161259--161332	35	2.1	34	83	11	89	51	1	0	47	1.09
161288--161332	23	2.0	23	90	0	72	53	2	0	44	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
161414--161452	13	2.9	13	81	7	51	61	0	0	38	0.96
165784--165834	23	2.2	23	80	16	61	27	3	0	68	1.07
165943--165973	16	1.9	16	93	0	53	58	0	0	41	0.98
180865--180945	30	2.7	29	77	5	81	44	3	18	33	1.67
188168--188207	12	3.6	12	74	19	50	52	5	25	17	1.64
188162--188212	21	2.4	21	96	3	93	50	3	25	19	1.64
191281--191316	15	2.3	16	85	9	56	61	2	5	30	1.33
196015--196078	33	1.9	33	100	0	128	34	21	3	40	1.69

Tables:   1   2

The End!