Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002417.1 Hibiscus syriacus cultivar Beakdansim tig00004939_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96692

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
288--335
7
7.0
7
90
9
73
14
16
12
56
1.68
3148--3238
22
4.2
22
78
9
98
80
0
19
0
0.72
3154--3238
29
2.9
29
91
5
127
81
0
18
0
0.70
3148--3216
7
9.7
7
92
3
102
82
0
17
0
0.67
3682--3749
32
2.1
33
91
2
111
44
16
14
25
1.85
8139--8232
23
4.0
24
73
14
88
34
24
23
18
1.96
9211--9251
21
2.0
21
85
9
57
24
31
31
12
1.92
14563--14656
23
4.0
24
75
14
88
34
24
23
18
1.96
21910--21972
24
2.7
23
83
9
83
0
4
11
84
0.77
21919--21973
14
3.6
14
75
17
56
0
3
10
85
0.72
21903--21971
32
2.1
33
84
7
88
0
5
13
81
0.87
24808--24886
22
3.6
22
91
0
131
31
16
13
37
1.88
25555--25864
45
6.8
45
88
2
431
25
23
19
31
1.98
26115--26189
3
25.0
3
80
0
78
38
0
1
60
1.06
26228--26289
21
3.0
21
80
2
81
29
33
25
11
1.91
27525--27567
14
3.0
14
80
6
50
32
0
2
65
1.06
30491--30705
29
7.3
29
78
10
134
35
21
5
37
1.76
30500--30580
31
2.8
27
87
9
99
38
17
1
43
1.57
30500--30704
60
3.5
59
82
6
168
36
20
4
38
1.73
30489--30705
89
2.4
88
81
7
242
36
21
5
37
1.75
30709--30753
17
2.6
17
92
3
72
13
22
46
17
1.83
38037--38147
30
3.8
30
80
4
100
34
19
4
41
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38037--38224
58
3.3
59
76
6
156
36
20
4
37
1.74
38035--38255
28
7.7
29
74
10
120
36
21
4
37
1.75
38260--38284
13
1.9
13
100
0
50
12
24
48
16
1.79
38276--38347
19
3.8
19
86
0
90
20
25
34
19
1.96
45463--45537
12
5.8
12
72
18
53
77
5
13
4
1.09
45467--45526
14
4.4
14
75
20
56
78
6
11
3
1.06
46593--46680
32
2.8
32
82
6
115
29
15
23
30
1.96
48364--48403
2
21.0
2
85
10
57
47
2
0
50
1.14
48370--48419
13
4.1
12
85
12
59
42
0
2
56
1.11
48364--48413
17
3.0
17
91
2
75
44
2
2
52
1.24
49622--49659
2
19.0
2
100
0
76
50
0
0
50
1.00
51554--51590
17
2.2
17
90
9
58
29
2
10
56
1.47
56629--56672
18
2.4
19
88
7
72
6
22
50
20
1.72
67392--67596
83
2.5
80
86
4
275
37
10
15
36
1.83
70329--70354
13
2.0
13
100
0
52
53
7
7
30
1.57
73143--73216
3
25.0
3
97
2
141
33
0
0
66
0.92
74043--74080
3
13.0
3
94
5
69
34
0
0
65
0.93
77459--77531
2
39.5
2
70
20
52
42
2
2
52
1.30
77680--77704
2
12.5
2
100
0
50
48
0
0
52
1.00
77733--77806
14
5.6
13
71
13
53
16
8
4
71
1.25
88954--89903
106
9.0
106
92
1
1450
33
24
18
23
1.97
95327--95383
29
2.0
29
100
0
114
35
33
10
21
1.87

Tables:   1

The End!