genome.fa.s2443.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002443.1 Hibiscus syriacus cultivar Beakdansim tig00005002_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  178042

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
296--328	4	8.8	4	87	12	52	24	0	0	75	0.80
460--494	4	8.8	4	87	0	52	20	5	0	74	1.02
20926--20962	18	2.1	18	94	0	65	27	29	16	27	1.97
25602--25659	12	4.8	12	82	0	71	51	18	15	13	1.76
25614--25696	24	3.5	24	80	3	96	45	18	16	19	1.85
30397--30451	17	3.2	17	66	19	51	27	12	5	54	1.60
30390--30458	34	2.0	34	100	0	138	28	11	5	53	1.60
33155--33223	34	2.0	34	97	0	129	27	23	26	23	2.00
43230--43262	2	16.5	2	100	0	66	51	0	0	48	1.00
44384--44482	23	4.3	23	73	5	92	33	20	27	19	1.96
44574--44623	19	2.9	16	78	16	64	44	16	16	24	1.86
49521--49546	12	2.2	12	100	0	52	7	50	0	42	1.31
54285--54335	23	2.3	23	86	6	79	19	21	41	17	1.91
61250--61299	19	2.9	16	75	16	55	46	16	14	24	1.83
61853--61944	20	4.5	20	69	17	55	23	17	13	45	1.83
63616--63717	2	51.0	2	77	18	88	49	0	3	46	1.27
63604--63717	12	9.0	13	74	14	71	47	0	4	47	1.28
63622--63728	54	2.0	55	87	9	157	49	0	4	44	1.29
63616--63789	51	3.1	56	80	14	175	47	1	4	46	1.30
63707--63761	22	2.5	22	90	3	83	49	1	3	45	1.30
76313--76350	17	2.2	17	86	9	51	0	18	2	78	0.86
77680--77777	29	3.4	29	66	16	85	43	5	2	48	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77657--77780	58	2.1	58	96	0	230	40	4	3	51	1.39
78471--78603	37	3.6	37	92	0	203	45	14	9	30	1.77
78968--79010	18	2.5	17	85	7	61	25	4	2	67	1.22
79062--79112	25	2.2	23	82	10	59	17	3	0	78	0.90
83159--83694	183	2.9	182	95	1	932	27	19	21	31	1.98
84840--84947	36	3.0	35	71	10	101	26	16	12	43	1.84
84824--84965	72	2.0	73	84	6	191	28	18	11	41	1.85
85091--85165	39	1.9	39	83	5	98	26	22	13	37	1.91
85068--85386	105	3.1	104	92	2	518	30	20	11	36	1.89
85286--85361	36	2.1	36	90	0	116	22	21	15	40	1.90
85561--86296	105	7.0	105	91	1	1122	33	26	17	22	1.96
86839--86943	37	2.8	37	86	0	138	40	14	15	29	1.86
87367--87441	22	3.4	21	77	15	64	16	2	5	76	1.09
87393--87444	25	2.2	23	83	10	61	17	3	1	76	1.02
87393--87466	26	3.0	24	77	14	64	16	8	2	72	1.19
88650--88713	32	2.0	32	93	0	110	28	25	21	25	1.99
90454--90531	30	2.6	30	83	2	84	28	20	20	30	1.98
90473--90531	30	2.0	30	89	0	91	25	23	20	30	1.98
92102--92131	2	15.0	2	100	0	60	50	0	0	50	1.00
102723--102772	20	2.5	20	100	0	100	32	20	16	32	1.94
102803--102851	20	2.5	20	81	18	59	42	10	16	30	1.81
109933--110088	63	2.5	63	95	1	276	30	19	23	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113172--113261	32	2.8	32	86	0	126	37	11	18	32	1.86
120760--120797	19	2.0	19	100	0	76	31	26	15	26	1.96
122490--122545	24	2.3	24	100	0	112	28	17	16	37	1.91
122767--122832	30	2.2	30	88	0	96	10	28	25	34	1.89
125579--125607	14	2.0	15	93	6	51	24	13	0	62	1.32
128142--128186	3	15.0	3	90	9	74	35	0	0	64	0.94
130358--130454	42	2.4	42	94	3	171	30	8	1	59	1.33
133754--133783	15	1.9	16	93	6	53	26	23	13	36	1.92
137089--137131	21	2.1	20	83	12	52	48	2	32	16	1.58
141737--141943	114	1.8	113	88	1	315	34	16	18	30	1.93
142718--142886	72	2.4	71	86	6	227	34	14	17	33	1.91
142976--143277	113	2.6	113	86	3	417	38	13	20	27	1.90
143220--143316	40	2.4	40	96	0	176	50	9	21	18	1.74
143669--143719	3	17.0	3	92	8	86	35	0	0	64	0.94
143686--143731	21	2.2	21	84	0	56	47	0	0	52	1.00
145042--145087	25	2.0	24	84	16	62	17	2	6	73	1.14
146612--146659	18	2.7	18	93	0	78	37	6	29	27	1.81
147560--147585	5	5.2	5	100	0	52	23	57	19	0	1.40
147030--147644	268	2.3	269	82	13	741	40	20	12	26	1.88
151081--151110	14	2.1	14	93	0	51	60	26	10	3	1.45
159495--159580	31	2.8	31	90	0	136	26	16	10	46	1.79
161590--161627	20	1.9	20	89	10	60	21	15	13	50	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
166903--166955	20	2.7	20	85	5	63	35	16	11	35	1.85

Tables:   1

The End!