Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002459.1 Hibiscus syriacus cultivar Beakdansim tig00005033_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99043

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2267--2322
3
18.3
3
79
17
62
37
1
0
60
1.07
6575--6669
41
2.3
41
85
0
127
38
22
8
30
1.83
18828--18936
35
3.1
36
84
5
134
30
15
20
33
1.94
21069--21198
37
3.4
36
77
14
118
37
1
4
56
1.30
21091--21195
37
2.7
41
84
11
132
37
0
4
57
1.27
21091--21186
40
2.5
39
85
9
126
36
1
5
57
1.28
21226--21378
78
2.0
78
90
0
243
40
14
10
34
1.80
28516--28546
2
15.5
2
100
0
62
48
0
0
51
1.00
29213--29259
13
3.5
13
77
13
51
55
2
2
40
1.24
30707--30744
3
12.7
3
100
0
76
65
0
0
34
0.93
33431--33489
21
2.8
21
81
0
82
20
38
32
8
1.83
37838--37935
20
4.8
21
85
8
107
12
18
21
47
1.80
37903--37950
19
2.5
19
93
0
78
18
16
18
45
1.85
38016--38048
6
5.7
6
96
3
59
30
51
18
0
1.46
38561--39108
112
4.9
112
93
1
922
46
14
14
24
1.82
38979--39434
182
2.5
182
89
4
704
44
11
15
28
1.81
42509--42594
35
2.5
35
92
1
138
59
1
1
38
1.13
45299--45332
15
2.4
14
85
9
50
70
0
8
20
1.13
47601--47668
18
3.7
18
75
7
73
20
20
29
29
1.98
47603--47693
38
2.4
38
90
0
137
25
19
26
28
1.99
47617--47697
20
4.2
20
75
9
87
30
17
23
28
1.97
47903--47944
21
2.0
21
85
4
57
52
0
19
28
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49312--49363
3
17.3
3
76
7
52
61
0
0
38
0.96
49377--49676
37
7.9
37
81
12
258
44
6
3
46
1.45
49415--49627
115
1.8
115
88
8
324
45
7
1
45
1.42
50345--50564
86
2.6
85
83
1
278
29
18
17
34
1.94
53999--54083
20
4.1
20
73
7
62
17
24
35
22
1.95
57694--57741
24
2.0
24
83
4
60
29
18
6
45
1.74
60218--61089
85
10.3
85
88
0
1210
25
19
19
35
1.95
60214--61086
424
2.1
424
88
1
1302
25
18
19
35
1.95
62329--62508
99
1.8
99
89
2
281
28
18
18
34
1.94
65214--65246
5
6.6
5
86
13
50
78
0
3
18
0.87
66565--66605
18
2.3
18
86
0
55
70
0
0
29
0.87
66813--66850
2
19.5
2
94
5
69
50
0
0
50
1.00
66613--66828
38
5.9
37
77
15
193
47
6
1
43
1.41
66775--66885
57
2.0
55
87
3
159
45
4
1
47
1.33
66831--66967
37
3.7
36
70
16
111
48
5
2
43
1.42
69441--69484
20
2.3
18
84
11
52
11
29
25
34
1.91
70414--70482
34
2.0
34
100
0
138
26
14
18
40
1.89
73519--73595
24
3.0
26
90
7
106
40
0
1
58
1.06
73519--73584
3
22.0
3
80
11
73
37
0
1
60
1.06
75905--75956
20
2.6
21
76
11
56
26
7
0
65
1.20
77989--78030
7
6.0
7
83
10
59
14
16
9
59
1.60
80270--80313
2
22.0
2
100
0
88
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
80604--80640
18
2.1
18
94
0
65
75
5
18
0
0.99
80611--80651
10
4.3
10
81
9
50
82
2
14
0
0.76
80625--80654
13
2.4
12
94
5
51
90
0
10
0
0.47
80607--80652
22
2.2
20
84
11
56
82
2
15
0
0.76
80607--80649
18
2.4
19
81
14
56
81
2
16
0
0.79
80618--80660
11
4.0
10
88
11
59
83
2
13
0
0.74
80618--80660
20
2.0
22
86
8
63
83
2
13
0
0.74
85079--85217
54
2.7
53
85
4
176
38
13
23
24
1.91
85590--85644
22
2.5
22
84
0
74
36
10
12
40
1.79
86320--87111
76
10.5
76
97
0
1473
21
21
21
34
1.96
87236--87312
24
3.0
26
90
7
106
40
0
1
58
1.06
87236--87301
3
22.0
3
80
11
73
37
0
1
60
1.06
88676--88733
15
3.6
17
75
13
61
22
6
0
70
1.10
88703--88778
11
6.5
11
70
20
50
28
3
3
63
1.30

Tables:   1

The End!