genome.fa.s2461.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002461.1 Hibiscus syriacus cultivar Beakdansim tig00005037_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  244757

Tables:   1   2   

This is table  1  of  2  ( 175 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2517--2565	4	12.2	4	78	8	55	48	24	4	22	1.67
3289--3376	44	2.0	44	88	0	131	30	18	11	39	1.86
4413--4453	17	2.5	17	77	18	50	58	0	2	39	1.11
4598--4640	18	2.3	19	92	4	70	48	9	2	39	1.48
6462--6551	2	45.0	2	95	4	164	48	0	1	50	1.08
10604--10673	31	2.3	31	100	0	140	32	15	24	27	1.95
12009--12081	35	2.0	37	82	10	89	50	4	1	43	1.29
30168--30219	23	2.3	23	86	0	77	21	38	21	19	1.94
31811--31848	18	2.1	18	90	0	58	47	28	21	2	1.64
36422--36464	4	10.8	4	100	0	86	25	0	0	74	0.82
44750--44783	17	2.0	17	94	0	59	47	2	0	50	1.16
45772--45854	29	2.8	29	92	1	139	43	9	14	32	1.78
50529--50611	29	2.8	29	92	1	139	43	9	14	32	1.78
59590--59723	66	2.0	66	95	0	241	20	31	26	21	1.98
60768--60809	9	4.3	9	85	14	57	0	11	0	88	0.53
60773--60809	11	3.3	11	96	3	65	0	10	0	89	0.49
60773--60809	12	3.2	12	92	3	58	0	10	0	89	0.49
60768--60809	20	2.0	21	95	4	77	0	11	0	88	0.53
62669--62745	36	2.1	36	85	0	100	33	14	35	16	1.89
62680--62748	36	1.9	36	90	0	111	33	13	33	20	1.91
62826--62900	15	5.1	15	66	9	55	49	0	0	50	1.00
62831--62910	38	2.1	37	82	13	92	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63243--63318	15	5.1	15	75	9	75	55	2	2	39	1.28
63243--63318	31	2.6	29	75	8	73	55	2	2	39	1.28
64029--64081	21	2.5	21	81	6	72	20	26	18	33	1.96
64071--64123	21	2.5	21	84	0	70	39	18	24	16	1.91
64112--64226	20	5.7	20	81	6	106	30	25	19	25	1.98
64111--64246	41	3.3	41	77	10	143	32	24	19	24	1.97
64969--65022	24	2.2	24	90	0	81	22	16	20	40	1.91
65197--65221	12	2.1	12	100	0	50	72	0	28	0	0.86
67488--67548	20	3.0	20	100	0	122	34	26	24	14	1.94
67564--67628	19	3.7	19	84	13	86	13	20	18	47	1.82
67768--67804	14	2.6	14	86	0	56	48	21	0	29	1.50
69661--69721	19	3.5	19	70	21	60	11	16	22	49	1.78
69677--69782	14	6.9	14	73	19	86	11	16	23	49	1.77
69661--69735	33	2.3	33	95	0	132	10	16	24	49	1.76
69677--69782	47	2.3	47	96	0	194	11	16	23	49	1.77
69726--69798	33	2.2	33	97	0	137	13	17	20	47	1.81
69783--69826	20	2.2	20	84	4	54	20	25	18	36	1.95
70372--70437	18	3.7	18	95	0	123	13	12	46	27	1.78
71784--71821	20	1.9	20	100	0	76	31	26	21	21	1.98
72073--72112	22	1.9	21	85	10	55	22	15	40	22	1.91
72080--72121	22	1.9	22	90	0	66	19	14	40	26	1.89
72312--72380	20	3.5	20	93	0	102	24	18	28	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72311--72425	20	5.7	20	78	6	97	24	17	25	33	1.96
90971--91022	20	2.6	20	96	0	95	38	26	13	21	1.90
91012--91110	21	4.8	20	72	6	72	36	23	19	21	1.95
91077--91270	20	9.6	20	81	5	221	35	25	19	19	1.95
91077--91270	60	3.2	60	83	0	253	35	25	19	19	1.95
91416--91458	21	2.0	21	90	0	68	23	39	13	23	1.90
91651--91721	33	2.2	33	92	0	115	11	22	18	47	1.80
91842--91895	14	3.6	14	77	18	63	40	24	25	9	1.85
91852--91900	16	3.1	16	72	21	57	44	22	24	8	1.79
91907--92004	19	5.7	19	70	22	81	10	24	22	42	1.84
91929--92018	14	5.7	14	74	23	81	8	25	23	42	1.83
91912--92026	33	3.5	33	95	0	212	9	24	20	45	1.81
93722--94100	185	2.1	183	96	2	715	22	12	18	45	1.83
93722--94098	93	4.1	93	97	1	717	22	12	18	45	1.83
94142--94270	19	7.3	19	75	17	125	45	28	17	8	1.77
94178--94270	33	2.8	32	91	4	150	46	27	18	7	1.76
94142--94270	52	2.5	52	74	14	140	45	28	17	8	1.77
94266--94399	19	7.6	19	76	18	137	10	19	23	46	1.81
94288--94344	14	3.7	14	77	20	60	8	21	24	45	1.80
94271--94399	33	3.8	33	89	5	177	10	18	24	47	1.79
96211--96283	38	1.9	38	97	0	137	28	1	16	53	1.51
96206--96270	19	3.4	19	64	8	51	24	1	15	58	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96265--96300	14	2.6	14	95	0	63	33	0	22	44	1.53
96407--96508	19	5.6	19	84	13	151	44	17	23	14	1.86
96537--96861	19	18.4	19	80	15	396	14	20	17	47	1.83
96515--96833	52	6.0	52	93	4	541	14	21	16	46	1.83
96556--96861	33	8.8	33	79	13	271	14	20	17	47	1.83
98194--98218	12	2.1	12	100	0	50	0	28	0	72	0.86
98393--98439	24	2.0	24	87	8	69	38	21	14	25	1.92
99131--99480	20	17.5	20	87	4	456	20	19	26	34	1.96
100482--100533	26	2.0	26	92	0	86	23	26	42	7	1.81
102763--102830	22	3.0	22	97	2	127	26	27	26	19	1.99
103124--103195	29	2.5	29	90	0	108	37	13	9	38	1.78
103463--103489	13	2.1	13	100	0	54	0	22	0	77	0.76
103499--103672	67	2.6	67	86	5	217	17	27	27	27	1.97
109845--109887	21	2.0	21	81	0	50	27	27	25	18	1.98
110856--111189	30	11.1	30	96	0	605	23	21	23	31	1.98
114484--114526	21	2.0	21	81	0	50	27	27	25	18	1.98
114553--114590	20	1.9	20	88	0	58	23	34	31	10	1.89
115480--115806	29	11.1	30	92	4	535	23	20	24	31	1.98
115480--115809	88	3.7	90	93	3	550	23	20	24	31	1.98
115480--115806	117	2.8	118	94	1	588	23	20	24	31	1.98
116974--117041	22	3.0	22	97	2	127	26	27	26	19	1.99
117321--117392	29	2.5	29	90	0	108	37	13	9	38	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117656--117682	13	2.1	13	100	0	54	0	22	0	77	0.76
117826--117852	13	2.1	13	100	0	54	0	22	0	77	0.76
117540--117880	171	2.0	171	98	1	659	24	19	14	41	1.89
117862--118030	65	2.5	65	85	5	205	17	26	28	27	1.97
122068--122123	24	2.3	24	100	0	112	28	17	16	37	1.91
123157--123215	23	2.6	22	74	15	66	62	22	0	15	1.32
124131--124226	39	2.5	41	77	14	96	38	14	2	44	1.57
124477--124543	21	3.0	21	77	12	71	43	5	1	49	1.36
124494--124541	25	2.0	24	88	12	71	37	6	2	54	1.38
125556--125596	16	2.6	16	92	3	66	39	12	19	29	1.88
125673--125735	23	2.7	23	90	0	99	25	15	19	39	1.91
126688--126719	2	16.5	2	93	6	57	53	0	0	46	1.00
138972--139005	2	17.0	2	100	0	68	50	0	0	50	1.00
139797--139828	13	2.5	13	95	5	57	21	12	9	56	1.64
141210--141238	11	2.6	11	100	0	58	10	6	17	65	1.44
141968--141995	2	14.0	2	100	0	56	50	0	0	50	1.00
142145--142182	20	1.9	20	94	0	67	34	15	5	44	1.69
142642--142673	14	2.4	14	94	5	57	12	25	46	15	1.81
143338--143416	39	2.1	39	81	6	92	51	7	12	27	1.66
151605--151693	45	2.0	45	93	6	155	29	7	26	35	1.85
151650--151764	59	2.0	58	96	3	214	28	9	26	35	1.88
156887--157108	120	1.8	120	90	3	356	38	9	12	39	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156887--157121	122	1.9	120	88	3	355	39	9	12	38	1.76
165259--165336	34	2.3	34	86	0	111	14	14	15	56	1.68
165291--165346	24	2.3	24	84	0	67	12	12	16	58	1.62
165602--165740	21	6.8	20	72	8	82	36	25	17	20	1.94
165707--165900	20	9.6	20	81	5	221	35	25	19	19	1.95
165707--165900	60	3.2	60	83	0	253	35	25	19	19	1.95
166283--166353	33	2.2	33	92	0	115	11	22	18	47	1.80
166433--166542	21	5.8	20	74	17	108	45	18	24	11	1.83
166426--166542	41	3.1	38	81	14	145	46	17	25	11	1.81
166493--166549	14	3.7	14	75	20	60	43	22	24	8	1.81

Tables:   1   2