genome.fa.s2461.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002461.1 Hibiscus syriacus cultivar Beakdansim tig00005037_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  244757

Tables:   1   2   

This is table  2  of  2  ( 175 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
166485--166565	33	2.5	33	95	0	144	46	22	22	8	1.78
166561--166658	19	5.7	19	70	22	90	10	23	22	43	1.83
166583--166668	14	5.4	14	70	24	64	8	25	23	43	1.81
166566--166680	33	3.5	33	96	0	212	10	23	20	46	1.81
167588--167623	14	2.6	14	95	0	63	33	0	22	44	1.53
167748--167865	33	3.4	33	82	15	164	44	17	24	13	1.85
167730--167847	19	6.4	19	87	10	174	45	16	22	14	1.84
167730--167865	73	1.9	72	96	3	256	44	17	24	13	1.85
167872--168024	33	4.5	33	74	16	159	13	22	17	45	1.84
167894--168110	19	12.4	19	77	19	249	13	21	17	46	1.83
167872--168082	52	4.0	52	99	0	413	13	23	17	45	1.83
167913--168124	33	6.2	33	77	14	234	13	22	18	46	1.83
170605--170651	24	2.0	24	87	8	69	38	21	14	25	1.92
171334--171583	20	12.5	20	86	0	268	20	18	24	36	1.94
171570--171667	21	4.8	20	75	15	83	22	17	22	37	1.94
171570--171668	42	2.4	43	78	8	107	22	17	23	37	1.94
171834--171956	24	5.2	23	78	8	122	11	12	18	57	1.64
171875--171925	10	4.8	10	77	13	57	9	11	19	58	1.60
171875--171939	33	1.9	34	87	3	96	9	12	20	58	1.61
171918--171953	14	2.6	14	100	0	72	5	13	22	58	1.56
172507--172565	28	2.1	28	84	12	77	59	0	0	40	0.97
172526--172550	12	2.1	12	100	0	50	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
174134--174559	159	2.7	158	87	6	609	27	15	6	50	1.70
183384--183414	15	2.0	16	93	6	55	45	6	25	22	1.76
185803--185852	18	2.6	21	78	18	63	10	38	0	52	1.35
186724--186785	31	2.0	31	100	0	124	45	19	6	29	1.75
187116--187195	29	2.8	29	80	0	88	16	33	32	17	1.92
187279--187340	31	2.0	31	93	0	106	22	35	16	25	1.94
188816--188871	22	2.5	22	82	8	60	35	12	5	46	1.65
190692--190721	16	1.9	16	93	6	53	23	13	6	56	1.60
194123--194167	22	2.0	22	100	0	90	53	4	8	33	1.52
205168--205201	2	17.0	2	93	0	59	47	0	2	50	1.16
206406--206499	32	2.9	32	82	0	98	32	9	23	34	1.87
206849--206993	43	3.4	43	89	0	209	32	29	13	24	1.94
207226--207328	43	2.4	43	83	0	134	30	31	17	21	1.96
206892--207600	335	2.1	337	86	2	969	33	24	17	25	1.96
207509--207598	32	2.7	34	74	10	96	33	24	15	26	1.95
207502--207843	121	2.8	121	92	0	549	31	23	16	27	1.96
207630--207719	32	2.8	30	77	12	81	33	22	16	27	1.95
207845--208518	84	8.0	84	89	2	881	31	25	19	23	1.98
212883--212972	31	2.8	31	90	6	128	14	18	12	54	1.71
216489--216553	31	2.1	31	100	0	130	26	7	24	41	1.82
217063--217090	14	2.0	14	100	0	56	28	14	21	35	1.92
217407--217610	102	2.0	102	97	0	381	33	17	19	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
217697--217727	15	2.1	15	100	0	62	29	19	25	25	1.99
218575--218665	31	2.9	31	86	3	130	23	17	23	36	1.95
229308--229332	12	2.1	12	100	0	50	16	32	44	8	1.76
231328--231405	18	4.5	18	80	17	94	58	0	0	41	0.98
231318--231399	34	2.5	33	84	5	114	59	0	0	40	0.97
234978--235016	19	2.1	19	100	0	78	41	10	28	20	1.85
235520--235563	20	2.2	20	84	8	54	31	9	27	31	1.88
237947--238022	40	1.9	40	88	0	116	43	5	11	39	1.64
238284--238326	14	3.1	14	82	0	59	13	2	13	69	1.28
238299--238350	24	2.2	24	82	0	59	11	9	15	63	1.52
244689--244730	16	2.7	15	85	7	57	30	21	4	42	1.73

Tables:   1   2

The End!