genome.fa.s2466.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002466.1 Hibiscus syriacus cultivar Beakdansim tig00005045_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  122623

Tables:   1   

This is table  1  of  1  ( 117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4334--4492	60	2.7	60	77	13	143	34	19	6	38	1.79
4378--4520	60	2.4	60	81	10	159	34	23	4	38	1.74
7355--7406	20	2.6	20	96	0	95	38	26	13	21	1.90
7462--7655	20	9.6	20	76	8	76	35	25	19	19	1.95
7458--7655	40	5.0	39	81	4	200	35	26	19	19	1.95
7462--7654	60	3.2	60	83	0	251	35	25	19	19	1.95
8036--8106	33	2.2	33	92	0	115	11	22	18	47	1.80
8237--8349	14	6.8	18	66	26	79	9	23	21	45	1.81
8254--8343	14	5.7	14	74	23	81	8	25	23	42	1.83
8237--8351	33	3.5	33	95	0	212	9	24	20	45	1.81
10042--10696	93	7.1	93	97	1	1257	21	12	18	46	1.83
10042--10696	184	3.5	186	98	1	1257	21	12	18	46	1.83
10042--10696	277	2.4	276	98	0	1267	21	12	18	46	1.83
10740--10868	19	7.3	19	75	17	125	45	28	17	8	1.77
10776--10868	33	2.8	32	91	4	150	46	27	18	7	1.76
10740--10868	52	2.5	52	74	14	140	45	28	17	8	1.77
10864--10998	19	7.6	19	75	16	128	11	19	23	45	1.82
10886--10942	14	3.7	14	77	20	60	10	21	22	45	1.82
10869--10961	33	2.8	33	95	0	168	10	20	21	47	1.80
12920--12955	14	2.6	14	95	0	63	33	0	22	44	1.53
13061--13162	19	5.6	19	84	13	151	44	17	23	14	1.86
13153--13395	19	13.8	19	75	17	177	14	21	17	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13169--13426	33	7.5	33	75	14	218	14	20	18	46	1.84
13169--13426	52	4.9	50	83	10	202	14	20	18	46	1.84
13153--13426	71	3.9	71	79	11	282	14	20	18	45	1.84
13210--13398	104	1.8	105	95	1	344	13	21	17	47	1.82
15907--15953	24	2.0	24	87	8	69	38	21	14	25	1.92
16635--17003	20	18.5	20	86	4	458	20	18	26	34	1.96
16971--17064	21	4.6	20	71	11	64	23	20	22	34	1.97
22427--22471	19	2.4	19	92	0	72	15	4	6	73	1.21
28324--28378	22	2.5	22	85	8	67	34	1	5	58	1.32
28337--28388	22	2.4	22	87	6	70	36	0	7	55	1.29
28585--28609	11	2.3	11	100	0	50	40	8	28	24	1.83
43110--43165	26	2.2	26	96	0	103	14	39	7	39	1.73
47076--47104	14	2.1	14	100	0	58	27	0	27	44	1.54
47524--47552	14	2.1	14	100	0	58	27	0	27	44	1.54
47067--47967	448	2.0	447	98	0	1730	28	15	16	39	1.88
49408--49793	183	2.1	183	91	3	627	45	8	2	42	1.49
56924--56958	18	1.9	18	88	0	52	20	2	40	37	1.67
59993--60038	21	2.2	20	81	14	56	58	2	6	32	1.36
60164--60220	29	2.0	29	96	0	105	38	7	19	35	1.79
62445--62503	30	2.0	30	93	0	100	49	0	1	49	1.11
66609--66957	20	17.5	20	84	4	418	34	26	18	20	1.95
67630--67676	24	2.0	24	87	8	69	25	14	21	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67851--67875	12	2.1	12	100	0	50	72	0	28	0	0.86
70178--70502	19	18.4	19	79	16	387	47	17	20	14	1.82
70206--70524	52	6.0	52	91	4	532	47	16	21	14	1.83
70531--70632	19	5.6	19	85	12	151	14	23	17	44	1.86
70738--70774	14	2.6	14	91	0	65	45	21	0	32	1.52
72685--72741	14	3.7	14	77	20	60	45	22	21	10	1.82
72666--72758	33	2.8	33	95	0	168	47	21	20	10	1.80
72629--72763	19	7.6	19	75	16	119	46	22	19	11	1.81
72759--72887	19	7.3	19	75	17	125	8	17	28	45	1.77
72759--72850	33	2.8	33	93	3	150	7	18	28	45	1.76
72931--73308	93	4.1	93	98	1	735	46	19	12	22	1.83
72931--73308	183	2.0	186	98	1	735	46	19	12	22	1.83
75013--75102	14	5.7	14	74	23	81	42	23	25	8	1.83
75005--75119	33	3.5	33	95	0	212	45	20	24	9	1.81
75012--75124	19	6.8	18	72	23	88	43	22	24	9	1.83
75136--75190	14	3.6	14	73	21	56	9	25	23	41	1.83
75120--75190	33	2.2	33	94	0	124	8	22	25	43	1.81
75131--75212	33	2.5	33	89	2	119	9	25	21	42	1.84
75143--75231	20	4.8	20	72	19	75	12	24	19	43	1.85
75311--75381	33	2.2	33	92	0	115	47	18	22	11	1.80
75563--75617	22	2.5	22	81	0	74	20	16	40	23	1.91
75763--75956	20	9.6	20	82	5	221	19	19	25	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75763--75956	60	3.2	60	83	0	253	19	19	25	35	1.95
75923--76021	21	4.8	20	72	6	72	21	20	22	36	1.95
76011--76062	20	2.6	20	96	0	95	21	13	26	38	1.90
78538--78594	23	2.5	23	100	0	114	57	12	22	7	1.58
79002--79052	19	2.6	20	78	6	59	31	27	13	27	1.94
79002--79112	40	2.7	39	77	9	98	35	24	11	28	1.91
79376--79435	20	2.9	21	80	9	70	30	11	25	33	1.91
79487--79542	20	2.7	22	89	8	82	32	14	26	26	1.95
79350--79573	110	2.0	110	88	1	333	34	11	22	32	1.89
79528--79586	20	2.8	22	76	10	68	28	10	20	40	1.85
87037--87071	12	2.8	12	91	4	52	20	0	2	77	0.90
87313--87423	57	1.9	57	94	0	195	25	13	18	43	1.86
91128--91203	35	2.2	35	92	0	125	39	23	1	35	1.63
91600--91847	130	1.9	130	91	1	408	35	15	13	35	1.86
91614--91878	130	2.0	129	80	5	293	39	13	13	33	1.84
92173--92233	26	2.3	26	82	5	68	45	1	3	49	1.28
92310--92343	16	2.0	18	88	11	54	64	5	2	26	1.30
94926--94963	20	1.9	20	88	0	58	23	34	31	10	1.89
95447--95763	103	3.1	103	97	0	598	25	13	24	36	1.92
95784--95846	23	2.7	23	80	4	74	23	26	23	25	2.00
96692--96765	31	2.4	31	86	0	112	27	27	12	33	1.92
98569--98676	31	3.5	31	89	0	162	25	27	12	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103445--103484	20	2.0	21	90	5	64	22	10	0	67	1.20
106502--106553	20	2.6	20	96	0	95	38	26	13	21	1.90
106609--106801	60	3.2	60	82	0	242	35	25	19	19	1.96
106609--106801	20	9.6	20	80	5	210	35	25	19	19	1.96
107182--107252	33	2.2	33	92	0	115	11	22	18	47	1.80
107373--107427	14	3.6	14	73	21	56	41	23	25	9	1.83
107373--107443	33	2.2	33	94	0	124	43	25	22	8	1.81
107439--107536	19	5.7	19	70	22	81	10	24	22	42	1.84
107461--107550	14	5.7	14	74	23	81	8	25	23	42	1.83
107444--107558	33	3.5	33	95	0	212	9	24	20	45	1.81
109255--109912	185	3.5	186	99	0	1293	22	12	18	46	1.83
109255--109912	93	7.1	93	99	0	1293	22	12	18	46	1.83
109255--109912	278	2.4	278	99	0	1307	22	12	18	46	1.83
109956--110117	19	9.3	19	75	19	165	45	30	16	7	1.75
110012--110068	14	3.7	14	75	20	60	43	29	19	7	1.77
109993--110117	33	3.8	33	97	2	234	45	30	17	6	1.73
109956--110087	52	2.5	51	76	10	151	45	30	16	7	1.75
110113--110247	19	7.6	19	75	16	128	11	19	23	45	1.82
110135--110191	14	3.7	14	77	20	60	10	21	22	45	1.82
110118--110210	33	2.8	33	95	0	168	10	20	21	47	1.80
112149--112184	14	2.6	14	95	0	63	33	0	22	44	1.53
112291--112392	19	5.6	19	84	13	151	44	17	23	14	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112421--112727	19	17.4	19	80	16	376	14	20	18	46	1.83
112421--112660	71	3.4	71	86	11	373	14	20	17	47	1.83
112383--112727	142	2.5	137	90	5	516	14	20	18	46	1.84
112421--112699	52	5.2	52	93	4	388	14	21	17	46	1.83
115204--115250	24	2.0	24	87	8	69	38	21	14	25	1.92
115933--116295	20	18.2	20	86	5	448	20	19	26	34	1.96
116386--116433	19	2.6	19	96	3	89	10	18	25	45	1.81

Tables:   1

The End!