genome.fa.s2471.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002471.1 Hibiscus syriacus cultivar Beakdansim tig00005051_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105334

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
281--323	14	3.0	14	86	6	68	9	13	62	13	1.53
14008--14052	20	2.2	20	88	0	63	37	0	2	60	1.09
14058--14093	17	2.2	17	90	5	56	55	0	5	38	1.23
15564--15589	8	3.2	8	100	0	52	15	0	11	73	1.11
18183--18236	28	2.0	27	82	10	65	42	1	1	53	1.22
24024--24077	24	2.2	24	83	0	63	27	9	14	48	1.75
24387--24512	41	3.3	40	71	22	128	56	19	8	15	1.65
24309--24568	71	3.6	71	87	1	351	56	15	8	19	1.64
27806--28314	252	2.0	253	98	0	975	32	26	11	29	1.92
30744--30786	16	2.7	16	88	0	68	34	18	9	37	1.83
31089--31141	21	2.5	21	84	0	70	20	22	18	37	1.94
31131--31183	20	2.7	20	90	0	79	37	20	22	18	1.94
31362--31437	22	3.5	21	82	7	80	26	36	15	21	1.93
31773--31860	20	4.4	20	82	1	79	17	17	22	43	1.88
33750--33886	20	7.5	20	71	21	95	43	22	18	14	1.87
33753--33918	87	1.9	87	92	0	278	44	21	19	13	1.86
33931--34019	20	4.4	20	94	0	133	20	20	24	34	1.96
34505--34607	21	4.9	21	74	2	91	21	35	19	23	1.96
34528--34610	42	2.0	42	83	4	105	21	38	19	20	1.93
36139--36223	33	2.5	33	92	1	134	43	18	23	14	1.87
36161--36228	20	3.8	19	72	21	74	47	19	22	11	1.81
36272--36365	20	4.7	20	88	2	136	18	20	25	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38701--38756	24	2.3	24	96	0	103	41	14	14	30	1.85
38795--38848	24	2.2	24	93	0	90	40	20	18	20	1.91
39652--39738	20	4.3	20	95	0	147	22	19	27	29	1.98
39725--39777	20	2.7	20	90	0	88	18	18	22	39	1.92
39774--39819	21	2.2	21	92	0	74	39	17	26	17	1.91
40094--40123	2	15.0	2	100	0	60	50	0	0	50	1.00
40838--40901	21	3.0	20	90	6	74	43	0	10	45	1.39
40851--40901	21	2.4	21	100	0	102	39	0	7	52	1.30
41904--41976	23	3.0	24	90	6	96	26	16	10	46	1.80
41918--41976	23	2.6	23	97	0	109	28	15	11	44	1.82
43373--43400	14	2.0	14	100	0	56	64	0	0	35	0.94
51840--51938	31	3.2	29	73	11	83	35	5	1	58	1.27
52046--52111	18	3.7	17	74	13	62	68	1	0	30	0.99
52787--52830	23	1.9	23	90	0	70	36	20	20	22	1.95
52787--52837	23	2.2	23	85	0	66	41	17	17	23	1.90
53971--54035	35	1.9	35	84	9	91	63	1	0	35	1.04
55724--55761	15	2.5	15	82	0	58	78	0	15	5	0.91
55710--55759	7	6.6	8	86	9	61	80	0	16	4	0.87
55710--55751	22	1.9	22	90	0	66	80	0	14	4	0.86
58155--58181	2	13.5	2	100	0	54	48	0	0	51	1.00
62371--62434	33	2.0	33	87	3	94	18	43	10	26	1.83
71072--71116	22	2.1	21	84	12	56	37	24	11	26	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76097--76331	36	6.6	36	91	2	386	17	29	22	30	1.96
79759--79812	17	3.1	19	69	17	53	57	0	0	42	0.98
79804--79860	2	29.0	2	82	3	62	45	0	0	54	0.99
84348--84390	17	2.6	16	82	14	52	32	18	16	32	1.93
84340--84380	17	2.7	15	80	20	50	36	12	21	29	1.90
90901--90925	2	12.5	2	100	0	50	48	0	0	52	1.00
93501--93552	17	2.7	19	80	20	63	42	0	0	57	0.98

Tables:   1

The End!