genome.fa.s2474.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002474.1 Hibiscus syriacus cultivar Beakdansim tig00005055_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82971

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6239--6287	19	2.6	19	83	6	55	22	2	10	65	1.34
6313--6438	61	2.1	61	92	4	211	45	9	14	30	1.77
6551--6671	59	2.1	59	91	0	197	35	22	14	27	1.93
12582--12611	15	1.9	16	93	6	53	26	3	0	70	1.03
14370--14415	21	2.2	21	88	0	65	19	32	21	26	1.97
14903--14949	14	3.4	14	85	5	69	29	0	8	61	1.25
14902--14950	12	3.8	12	80	17	53	30	0	8	61	1.25
15012--15049	19	2.0	19	89	0	58	42	5	10	42	1.62
15497--16256	138	5.5	138	85	4	975	34	22	18	24	1.96
37810--37862	21	2.5	21	84	0	70	20	26	18	33	1.96
37852--37998	20	7.3	20	83	3	188	38	20	19	21	1.93
40844--40912	22	3.1	22	82	15	65	53	1	0	44	1.09
40919--40993	28	2.7	28	80	13	84	44	0	1	54	1.08
40895--40993	27	3.6	27	76	16	89	45	0	2	52	1.12
41082--41144	32	2.0	32	84	6	83	52	4	0	42	1.22
41114--41213	41	2.3	44	76	15	109	53	0	2	45	1.12
41136--41185	17	2.9	18	82	11	61	64	0	0	36	0.94
41303--41352	20	2.5	20	100	0	100	34	16	10	40	1.81
41335--41407	30	2.5	29	93	2	128	31	19	6	42	1.77
41335--41407	15	4.9	15	79	3	94	31	19	6	42	1.77
43038--43149	29	3.8	29	93	1	188	32	14	11	41	1.81
59550--59628	41	1.9	41	92	0	131	35	10	20	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59918--59951	14	2.4	14	100	0	68	52	0	29	17	1.45
64274--64305	16	2.0	16	93	0	55	21	6	0	71	1.07
64269--64312	19	2.2	20	84	11	56	27	4	0	68	1.09
66434--66486	21	2.5	21	84	0	70	20	26	18	33	1.96
66476--66622	20	7.3	20	83	3	188	38	20	19	21	1.93
67486--67539	24	2.2	24	90	6	83	22	16	20	40	1.91
69373--69413	14	2.9	14	100	0	82	41	29	21	7	1.80
69401--69489	20	4.4	20	77	13	94	37	23	19	20	1.94
69411--69487	40	1.9	41	89	2	120	38	20	18	22	1.93
69494--69581	19	4.8	19	70	16	78	45	14	21	18	1.85
69591--69685	33	2.8	34	87	3	129	13	23	20	43	1.87
71202--71294	42	2.2	42	80	3	107	22	17	39	20	1.92
71578--71624	20	2.3	20	96	0	85	42	25	19	12	1.86
71737--71858	34	3.4	34	80	12	145	18	21	19	40	1.92
71756--71881	20	6.6	20	82	10	156	20	19	20	38	1.93
71737--71881	74	2.0	74	90	0	227	19	20	20	40	1.91
73764--73801	20	1.9	20	100	0	76	55	21	13	10	1.67
74202--74263	18	3.0	22	69	26	62	17	16	38	27	1.91
74441--74612	20	8.6	20	84	3	213	22	19	19	37	1.94
74439--74612	60	2.9	59	86	7	242	23	19	19	37	1.94
74609--74654	21	2.2	21	88	0	65	36	17	28	17	1.92
77918--77959	21	2.0	21	90	0	66	16	30	26	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78449--78494	13	3.5	13	85	5	65	28	0	8	63	1.24
78557--78594	19	2.0	19	89	0	58	42	5	10	42	1.62
80183--80217	18	1.9	18	100	0	70	28	20	5	45	1.73
81723--81809	36	2.4	35	80	14	88	47	6	18	27	1.74

Tables:   1

The End!