genome.fa.s2482.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002482.1 Hibiscus syriacus cultivar Beakdansim tig00005068_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  115016

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
353--384	13	2.4	13	94	5	55	34	21	9	34	1.86
888--943	17	3.4	16	80	7	67	62	1	0	35	1.06
4134--4266	60	2.2	59	85	6	171	31	18	15	33	1.93
5257--5343	31	2.8	31	82	1	102	36	12	13	36	1.83
13154--13203	4	12.5	4	86	0	64	28	4	20	48	1.67
18589--18662	35	2.1	35	97	0	139	33	27	12	27	1.92
19066--19101	17	2.1	17	89	5	54	47	0	0	52	1.00
26481--26835	178	2.0	176	84	7	459	20	10	17	51	1.75
31490--31547	24	2.5	24	81	13	59	39	8	0	51	1.33
35298--35323	5	5.2	5	100	0	52	0	19	57	23	1.40
44428--45042	105	5.8	105	96	0	1097	22	18	25	33	1.97
44428--45042	211	2.9	210	96	0	1097	22	18	25	33	1.97
44437--45042	316	1.9	316	95	0	1106	22	18	25	33	1.97
52427--52475	20	2.3	22	75	13	57	16	20	2	61	1.44
52552--52629	39	2.0	39	82	5	95	16	25	28	29	1.97
59153--59180	2	14.0	2	100	0	56	50	0	0	50	1.00
59631--59696	30	2.2	30	88	0	96	39	13	16	30	1.87
66600--66729	60	2.2	60	80	6	138	36	12	15	35	1.85
70560--70618	31	1.9	31	92	0	100	40	6	10	42	1.65
70643--70685	22	2.0	22	100	0	86	51	13	0	34	1.42
70633--71414	54	14.4	54	74	16	365	52	12	0	34	1.41
70665--70776	32	3.7	32	78	18	148	51	16	0	32	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70633--70799	58	3.0	58	90	5	256	52	15	0	32	1.43
70823--70876	14	3.6	14	72	18	54	57	5	0	37	1.22
70801--71231	32	12.5	32	72	21	222	52	12	0	35	1.39
70865--70929	22	3.0	22	95	0	121	50	12	0	36	1.40
70941--70983	22	2.0	22	100	0	86	51	13	0	34	1.42
70943--70991	22	2.2	22	88	3	71	55	14	0	30	1.40
70941--71235	112	2.7	104	84	14	400	52	13	0	34	1.40
70633--71449	274	3.0	273	89	8	1164	52	12	0	35	1.41
71139--71203	22	3.0	22	97	0	121	52	12	0	35	1.39
71215--71257	22	2.0	22	100	0	86	51	13	0	34	1.42
71217--71265	22	2.2	22	88	3	71	55	14	0	30	1.40
71237--71414	32	6.4	31	66	30	107	51	11	0	35	1.43
71394--71556	15	10.5	15	85	9	220	50	1	0	46	1.16
71349--71449	22	4.5	22	69	7	76	50	7	0	41	1.31
84691--84743	27	2.0	27	85	3	72	47	1	9	41	1.47
85598--85622	7	3.6	7	100	0	50	32	0	0	68	0.90
87558--87665	19	5.6	19	72	12	78	34	26	12	25	1.93
91216--91253	20	1.9	20	88	0	58	47	23	15	13	1.81
91262--91318	20	2.8	20	83	0	69	24	19	19	36	1.94
91408--91457	25	2.0	25	92	0	82	26	6	22	46	1.74
91836--91888	24	2.2	24	86	0	70	33	3	13	49	1.60
92191--92277	39	2.2	39	89	0	138	47	20	14	17	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92436--92475	20	2.0	20	90	0	62	42	22	17	17	1.89
92542--92580	19	2.0	20	95	5	71	15	15	25	43	1.86
96641--96698	22	2.6	22	91	0	89	20	13	43	22	1.87
96867--96920	20	2.7	21	80	8	76	27	14	29	27	1.95
101253--101360	54	2.0	54	98	0	207	32	14	13	38	1.86
103006--103061	19	3.1	18	80	15	53	48	0	5	46	1.25
103702--103728	9	3.0	9	100	0	54	33	0	0	66	0.92
103709--103782	23	3.1	23	77	13	62	32	2	0	64	1.07
103740--103789	25	2.0	25	84	11	66	32	6	0	62	1.20
107309--107348	20	2.0	20	100	0	80	25	10	10	55	1.64
108016--108054	20	1.9	20	84	5	51	53	2	2	41	1.28
110239--110328	20	4.3	20	64	20	58	56	3	1	38	1.23
110229--110424	64	3.1	64	96	0	365	54	2	1	41	1.23
112120--112149	2	15.0	2	100	0	60	50	0	0	50	1.00

Tables:   1

The End!