genome.fa.s2485.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002485.1 Hibiscus syriacus cultivar Beakdansim tig00005071_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  244926

Tables:   1   2   

This is table  2  of  2  ( 197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
167330--167375	23	2.0	23	91	0	74	50	15	21	13	1.78
168908--168960	20	2.7	20	88	5	72	43	24	16	15	1.87
168946--169183	20	11.6	20	77	11	216	36	26	18	19	1.94
168947--169186	41	5.9	41	86	6	310	37	25	17	19	1.94
168908--169182	81	3.4	80	81	8	281	37	25	17	18	1.93
168927--169182	122	2.1	123	93	0	433	37	25	17	18	1.93
169723--169814	21	4.8	21	70	17	74	48	17	21	11	1.79
169834--169898	19	3.7	19	70	19	68	12	23	20	44	1.84
169856--169912	14	3.7	14	70	20	51	10	24	21	43	1.83
169839--169920	33	2.5	33	95	0	155	10	23	18	47	1.80
171616--171878	94	2.8	94	89	2	395	22	12	18	46	1.82
171943--172048	19	5.4	19	82	9	124	46	22	17	13	1.83
171943--172055	38	2.9	38	86	5	145	47	22	16	13	1.81
171983--172067	38	2.4	36	88	9	122	48	22	20	9	1.78
172077--172170	33	2.8	33	90	0	143	9	22	23	44	1.82
172109--172194	19	4.7	19	73	16	74	11	22	19	46	1.82
172640--172725	42	2.0	42	80	8	95	23	37	18	20	1.94
174078--174113	14	2.6	14	95	0	63	33	0	22	44	1.53
174236--174280	14	3.1	14	83	3	54	53	20	17	8	1.70
174290--174384	33	2.8	33	88	1	136	13	22	21	43	1.87
174286--174351	19	3.7	19	69	19	61	13	22	19	43	1.86
174369--174430	20	3.0	20	68	21	56	22	19	24	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
176898--176951	24	2.2	24	93	0	90	40	20	18	20	1.91
176898--176965	24	2.8	24	84	0	64	38	20	17	23	1.93
177077--177110	12	2.8	12	90	0	50	14	0	29	55	1.40
177772--178124	20	17.5	20	76	12	265	19	17	23	39	1.92
177831--178124	121	2.4	122	84	4	387	19	17	23	39	1.92
181672--181707	2	18.0	2	100	0	72	50	0	0	50	1.00
186156--186196	2	20.5	2	100	0	82	48	0	0	51	1.00
194293--194354	3	20.3	3	82	9	72	61	0	1	37	1.06
194481--195504	76	13.5	76	98	0	1942	36	21	20	21	1.96
198598--199276	83	8.2	83	95	0	1200	37	21	13	27	1.91
206161--206209	17	2.8	17	81	3	62	73	2	0	24	0.94
206183--206246	20	3.3	19	72	23	53	65	0	4	29	1.13
208222--208283	3	20.3	3	82	9	72	61	0	1	37	1.06
210944--210969	2	13.0	2	100	0	52	50	0	0	50	1.00
213113--213152	16	2.5	16	87	0	53	22	25	17	35	1.95
213318--213401	38	2.3	38	78	19	97	39	2	3	54	1.31
213953--214000	23	2.1	23	92	0	78	37	25	12	25	1.91
214375--214476	42	2.4	41	90	3	150	37	13	20	28	1.91
214397--214488	42	2.2	42	92	0	148	36	14	18	30	1.90
216330--216487	81	2.0	81	92	0	262	12	37	21	27	1.90
222492--222587	43	2.2	43	87	5	131	33	25	15	26	1.95
222517--222641	43	2.9	42	82	7	126	36	24	12	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
222572--222664	43	2.2	43	84	3	116	34	24	10	30	1.90
222883--222940	20	2.9	20	80	10	73	60	13	8	17	1.58
225485--225574	47	1.9	47	83	0	117	45	5	28	20	1.73
225524--225633	53	2.1	53	82	0	130	40	5	32	21	1.76
225644--225762	6	19.8	6	77	0	85	6	5	40	47	1.52
227534--227577	12	3.7	12	90	0	70	6	6	36	50	1.56
227537--227589	24	2.2	24	83	6	63	11	5	39	43	1.64
228231--228365	59	2.2	60	92	2	218	34	10	8	46	1.69
228453--228493	2	20.0	2	95	5	73	48	2	0	48	1.14
228462--228539	18	4.3	18	84	10	81	46	3	6	43	1.47
228719--228779	20	3.2	19	81	9	63	45	3	4	45	1.41
228739--228850	18	6.1	18	68	20	63	46	3	4	45	1.40
228739--228837	2	46.0	2	74	15	65	46	4	4	45	1.40
228676--228872	64	3.2	61	74	21	153	44	5	5	45	1.47
228845--228892	22	2.2	22	92	7	80	45	8	6	39	1.59
228887--228955	31	2.2	33	86	5	97	36	2	10	50	1.51
228739--228982	15	15.9	15	65	24	77	43	4	7	45	1.52
228695--228982	13	22.0	13	66	21	81	42	4	7	45	1.53
228887--228943	9	6.7	9	74	11	57	36	3	10	49	1.55
228868--229126	110	2.4	107	81	10	276	38	6	10	44	1.63
229668--230139	54	8.8	54	90	0	714	39	17	11	31	1.85
240031--240475	54	8.2	54	91	2	698	39	17	11	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
240031--240456	163	2.6	163	92	2	689	38	18	11	31	1.87
240031--240475	217	2.1	215	92	2	732	39	17	11	31	1.86
240889--240926	19	2.0	19	89	0	58	36	2	13	47	1.56
241842--242225	18	20.3	18	67	20	87	45	4	3	46	1.40
241926--242103	2	88.5	2	68	17	84	46	4	2	46	1.37
242017--242232	11	21.3	11	65	23	59	41	3	4	50	1.41
242005--242099	23	4.4	23	71	22	71	45	2	3	49	1.29
241939--242225	20	14.9	18	71	17	138	43	4	3	47	1.41
242143--242214	13	5.8	13	70	15	55	45	6	2	44	1.45
242119--242192	15	4.4	16	75	22	71	43	4	5	47	1.45
243886--243925	20	2.0	20	85	5	53	22	20	12	45	1.84

Tables:   1   2

The End!