genome.fa.s2510.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002510.1 Hibiscus syriacus cultivar Beakdansim tig00005110_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113666

Tables:   1   

This is table  1  of  1  ( 110 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8576--8601	9	2.9	9	100	0	52	42	0	34	23	1.54
15710--15770	24	2.5	26	77	17	69	55	0	0	44	0.99
15728--15767	19	2.1	19	85	0	53	55	0	0	45	0.99
18350--18497	60	2.5	60	80	4	156	32	27	6	33	1.81
18573--18686	60	1.9	60	81	0	138	40	7	21	30	1.81
19693--19746	28	1.9	28	85	7	74	48	37	0	14	1.45
19983--20014	17	1.9	17	93	6	57	50	0	15	34	1.45
20620--20667	22	2.2	22	84	0	60	60	14	12	12	1.59
25707--25740	2	17.0	2	100	0	68	50	0	0	50	1.00
25921--25948	10	2.8	10	100	0	56	35	21	0	42	1.53
28411--28484	21	3.6	20	83	1	76	32	21	24	21	1.98
28434--28484	21	2.4	21	93	0	84	31	23	21	23	1.98
38006--38086	19	4.3	19	70	13	60	48	3	0	48	1.19
38012--38136	49	2.5	51	75	11	127	50	2	0	46	1.20
38108--38148	22	1.9	21	95	5	73	46	0	0	53	1.00
38180--38223	12	3.8	11	79	8	52	40	2	2	54	1.25
40495--40551	27	2.1	27	96	0	105	31	0	12	56	1.36
41083--41107	6	4.2	6	100	0	50	20	0	32	48	1.50
41471--41497	2	13.5	2	100	0	54	51	0	0	48	1.00
41871--41911	9	4.3	10	81	9	50	0	31	0	68	0.90
42517--43008	229	2.1	229	94	1	862	44	7	7	39	1.63
43078--43551	181	2.6	182	89	1	693	43	14	16	26	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43481--43523	20	2.3	19	88	11	63	51	11	16	20	1.75
45745--45786	21	2.0	21	90	0	66	40	11	30	16	1.85
45820--45885	33	2.0	33	84	0	87	30	0	45	24	1.53
47677--47723	19	2.6	19	90	6	71	29	2	10	57	1.44
47840--48805	198	4.9	198	96	0	1767	36	14	18	31	1.91
47840--48805	395	2.4	396	96	0	1767	36	14	18	31	1.91
50286--50345	3	20.0	3	76	6	59	35	6	31	26	1.82
50282--50345	12	5.1	12	77	17	67	34	7	31	26	1.85
51539--51572	16	2.1	16	88	0	50	47	8	20	23	1.78
51869--51917	22	2.2	23	78	10	57	40	12	10	36	1.77
51935--51998	23	2.8	23	87	0	92	37	4	20	37	1.74
51943--52007	23	2.8	24	84	9	82	35	4	18	41	1.71
52366--52438	23	3.2	23	84	0	92	35	4	21	38	1.73
51731--52782	431	2.4	430	96	1	1912	41	7	11	39	1.70
52818--53304	180	2.7	178	94	3	841	34	15	17	32	1.91
55771--55835	25	2.6	25	80	0	85	35	9	13	41	1.77
56178--56240	23	2.7	23	92	0	99	38	4	19	38	1.73
56178--56250	23	3.2	22	84	7	83	35	4	20	39	1.72
56514--56563	25	2.0	25	96	0	91	26	8	22	44	1.80
57251--57337	39	2.2	39	95	0	156	48	20	13	17	1.81
57755--57827	23	3.2	23	88	0	101	34	4	21	39	1.73
58183--58255	23	3.2	23	92	0	119	34	5	21	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57553--58548	428	2.3	430	96	0	1847	41	7	12	38	1.71
59074--59231	21	7.8	20	72	7	86	38	25	17	18	1.92
59198--59391	20	9.6	20	81	5	221	35	25	19	19	1.95
59198--59391	60	3.2	60	83	0	253	35	25	19	19	1.95
59771--59841	33	2.2	33	92	0	115	11	25	15	47	1.78
59921--60024	21	5.4	20	71	15	87	45	19	25	10	1.82
59919--59997	21	3.8	21	79	12	92	45	16	26	11	1.81
59920--59997	41	1.9	41	94	0	138	44	16	26	11	1.82
59973--60042	33	2.1	33	94	0	122	47	21	24	7	1.76
59979--60053	33	2.3	33	90	0	114	46	25	21	6	1.75
59995--60053	19	3.4	18	71	22	54	45	27	18	8	1.78
60049--60146	19	5.7	19	70	22	81	10	24	22	42	1.84
60071--60160	14	5.7	14	74	23	81	8	25	23	42	1.83
60054--60168	33	3.5	33	95	0	212	9	24	20	45	1.81
61864--62243	93	4.1	93	97	0	726	22	12	18	45	1.83
62287--62414	19	7.3	18	73	19	110	46	27	17	9	1.78
62322--62414	33	2.8	32	90	4	141	46	26	18	8	1.78
62410--62544	19	7.6	19	76	16	137	10	19	24	45	1.81
62432--62488	14	3.7	14	77	20	60	8	21	24	45	1.80
62415--62507	33	2.8	33	98	0	177	9	20	22	47	1.79
63821--63856	14	2.6	14	95	0	63	33	0	22	44	1.53
63963--64060	19	5.4	19	84	13	143	45	17	22	14	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63963--64078	53	2.2	53	96	1	216	43	18	24	12	1.85
64085--64341	33	7.5	33	78	15	263	13	22	18	45	1.84
64107--64341	19	13.4	19	78	18	269	13	21	18	46	1.83
64126--64310	52	3.5	52	98	1	361	13	22	17	46	1.83
66613--66637	12	2.1	12	100	0	50	0	28	0	72	0.86
66812--66858	24	2.0	24	87	8	69	38	21	14	25	1.92
67539--67788	20	12.5	20	87	1	277	19	18	24	37	1.94
67775--67857	21	4.0	21	73	6	78	25	16	24	33	1.96
67755--67853	42	2.4	43	77	11	100	21	18	23	37	1.94
67995--68126	55	2.4	55	81	8	151	25	10	20	43	1.84
70923--71396	161	3.0	161	87	0	682	44	15	13	27	1.83
83072--83229	21	7.8	20	72	7	86	38	25	17	18	1.92
83196--83425	20	11.5	20	81	5	232	36	24	18	19	1.94
84106--84152	24	2.0	24	87	8	69	25	14	21	38	1.92
84327--84351	12	2.1	12	100	0	50	72	0	28	0	0.86
86634--86902	33	7.7	34	76	15	219	46	17	21	13	1.83
86648--86902	19	14.4	19	79	16	316	47	17	21	14	1.83
86676--86902	52	4.2	52	86	9	289	47	16	22	14	1.82
86648--86902	90	2.9	90	92	4	414	47	17	21	14	1.83
86634--86924	52	5.6	52	82	12	282	46	17	21	13	1.83
86648--86924	142	2.0	143	95	4	503	46	17	21	14	1.83
86931--87047	53	2.2	53	100	0	234	13	24	17	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86949--87047	20	5.4	19	82	15	136	14	23	17	45	1.84
87145--87202	14	4.4	13	77	10	55	50	20	0	29	1.49
89111--89225	19	6.6	19	75	18	106	46	23	20	10	1.81
89147--89203	14	3.7	14	77	20	60	45	22	21	10	1.82
89128--89220	33	2.8	33	95	0	168	47	21	20	10	1.80
89221--89349	19	7.3	19	75	17	125	9	16	28	45	1.78
89221--89312	33	2.8	33	93	3	150	8	17	28	45	1.78
89397--89677	92	3.1	93	97	1	523	45	19	12	22	1.83
91378--91467	14	5.7	14	72	23	72	43	23	24	8	1.82
91370--91484	33	3.5	33	97	0	221	46	20	23	9	1.80
91392--91489	19	5.7	19	71	22	90	43	22	23	10	1.83
91501--91557	14	3.7	14	72	20	51	10	22	22	43	1.84
91485--91565	33	2.5	33	93	0	135	9	20	22	46	1.80
91541--91596	21	2.8	20	86	5	76	12	26	17	42	1.85
91542--91616	20	3.7	21	83	5	100	12	25	17	45	1.82
91696--91766	33	2.2	33	92	0	115	47	18	22	11	1.80
91948--92002	22	2.5	22	81	0	74	20	16	40	23	1.91
92149--92341	20	9.6	20	83	4	219	19	20	25	35	1.96
92328--92410	21	4.0	21	73	6	78	25	16	24	33	1.96
92308--92406	42	2.4	43	77	11	100	21	18	23	37	1.94
94483--94512	13	2.3	13	100	0	60	13	56	16	13	1.67
105854--107415	518	3.0	518	97	0	2941	25	16	23	35	1.95

Tables:   1

The End!