genome.fa.s2538.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002538.1 Hibiscus syriacus cultivar Beakdansim tig00005154_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  352938

Tables:   1   2   

This is table  2  of  2  ( 178 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
223664--223874	102	2.1	102	93	0	359	36	22	13	27	1.92
228792--228857	23	2.9	23	86	0	87	27	24	28	19	1.99
228882--229074	103	1.9	103	92	0	323	37	19	11	31	1.87
230757--230786	8	3.8	8	100	0	60	63	23	0	13	1.29
234607--234683	32	2.5	31	79	10	86	40	18	9	32	1.82
244796--244835	20	2.0	21	90	5	64	52	5	2	40	1.37
247081--247169	29	3.1	29	80	6	99	48	10	17	23	1.78
253171--253197	6	4.5	6	100	0	54	37	14	14	33	1.88
263532--264187	326	2.0	326	99	0	1285	43	9	13	33	1.76
264667--264710	21	2.1	21	95	0	79	29	27	25	18	1.98
264674--264718	21	2.3	19	85	11	56	26	24	28	20	1.99
264522--264902	189	2.0	189	100	0	762	30	24	26	17	1.97
264856--264899	21	2.1	21	95	0	79	29	27	25	18	1.98
276962--276988	14	1.9	14	100	0	54	59	0	3	37	1.15
277014--277066	22	2.3	23	83	6	63	60	1	0	37	1.08
277023--277066	24	1.9	22	86	9	61	61	0	0	38	0.96
285762--285786	12	2.1	12	100	0	50	40	0	28	32	1.57
291157--291268	59	1.9	59	84	1	152	35	16	14	33	1.88
291154--291285	60	2.2	59	81	5	149	34	15	16	32	1.91
292320--292357	16	2.4	16	82	4	51	34	0	23	42	1.55
293889--293956	3	22.0	3	85	5	91	38	0	0	61	0.96
295412--295453	20	2.2	19	86	4	57	33	0	2	64	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
295307--295545	120	2.0	119	82	4	286	38	7	8	46	1.63
295509--295563	27	2.0	27	86	6	76	47	1	0	50	1.11
296042--296094	26	2.0	26	85	0	70	33	3	3	58	1.34
301380--301422	11	3.9	11	82	17	54	83	2	13	0	0.74
301379--301433	29	2.0	28	89	7	85	83	1	12	1	0.80
301377--301424	11	4.5	10	82	17	53	85	2	12	0	0.69
301375--301423	18	3.0	17	80	14	59	83	4	12	0	0.77
303300--303519	114	1.9	114	90	0	350	33	15	20	30	1.93
306039--306064	7	3.7	7	100	0	52	88	0	0	11	0.52
307347--307384	16	2.4	16	100	0	76	10	18	18	52	1.73
307886--308221	165	2.0	165	83	7	416	28	24	18	28	1.98
307897--308266	55	6.7	55	82	7	339	27	24	18	28	1.98
307897--308266	165	2.2	164	80	9	405	27	24	18	28	1.98
309641--309686	16	2.9	16	87	9	67	8	15	0	76	1.02
309628--309752	16	7.3	17	70	16	62	8	15	1	75	1.11
309641--309734	9	10.7	9	72	15	63	8	12	2	76	1.09
321160--321186	13	2.1	13	100	0	54	85	0	0	14	0.61
323809--323885	22	3.5	22	90	0	127	32	11	14	41	1.82
324400--324732	167	2.0	169	89	5	512	36	13	11	38	1.81
324735--325455	76	9.5	76	95	0	1282	25	19	21	33	1.97
324735--325455	153	4.7	152	95	0	1282	25	19	21	33	1.97
324735--325455	229	3.2	229	96	0	1320	25	19	21	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
325397--325500	45	2.3	45	94	0	181	27	18	20	33	1.96
325244--325706	198	2.4	197	94	1	786	25	19	20	33	1.97
325320--325576	121	2.1	122	94	0	444	26	19	20	33	1.97
325442--325659	76	2.9	76	93	0	375	25	20	19	34	1.96
325594--325741	45	3.3	45	92	1	242	24	20	18	35	1.95
325895--325943	3	16.0	3	95	4	89	65	0	0	34	0.93
327281--327510	119	2.0	117	83	6	295	37	8	8	45	1.65
327385--327426	20	2.2	19	86	4	57	33	0	2	64	1.07
327483--327535	27	1.9	27	85	11	72	49	1	0	49	1.12
328995--329067	31	2.4	31	90	0	110	26	15	27	31	1.95
330553--330582	2	15.5	2	93	6	53	46	0	0	53	1.00
331215--331250	15	2.4	15	90	0	54	38	0	2	58	1.13
332382--332456	38	2.0	37	84	5	98	49	2	1	46	1.24
343471--343502	15	2.1	15	94	0	55	37	0	0	62	0.95

Tables:   1   2

The End!