genome.fa.s2550.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002550.1 Hibiscus syriacus cultivar Beakdansim tig00005177_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  183756

Tables:   1   

This is table  1  of  1  ( 113 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18700--18824	16	7.2	17	71	22	73	72	0	20	7	1.13
18700--18785	28	3.2	27	76	14	81	72	1	20	5	1.13
18774--18845	7	9.7	7	74	16	65	76	0	13	9	1.02
18805--18857	13	4.0	13	80	9	63	81	0	9	9	0.89
18773--18852	36	2.3	32	83	10	88	77	0	13	8	0.99
20171--20416	51	4.8	51	90	6	374	28	15	28	26	1.96
20172--20527	104	3.4	103	86	6	380	28	16	26	27	1.97
20181--20533	55	6.7	54	85	8	279	28	17	27	26	1.97
25837--25983	21	6.9	21	70	11	102	27	13	24	34	1.93
29683--29733	2	25.5	2	100	0	102	50	0	0	49	1.00
30167--30227	22	2.8	22	92	0	104	22	27	16	32	1.96
31466--31507	20	2.1	20	90	0	66	26	19	28	26	1.98
37795--37835	21	2.0	21	90	0	64	19	17	51	12	1.76
41856--41918	31	2.0	31	96	0	117	36	20	15	26	1.93
46607--46990	210	1.8	209	89	2	610	31	17	20	31	1.95
57602--57643	21	2.0	21	95	0	75	30	14	7	47	1.71
57638--57740	33	3.2	33	91	2	165	32	7	15	44	1.75
57782--57820	15	2.6	15	87	0	60	28	12	12	46	1.79
58329--58389	23	2.7	23	92	0	95	36	16	21	26	1.94
58469--58540	15	4.7	15	89	1	90	29	18	12	40	1.87
58469--58540	30	2.4	31	88	2	101	29	18	12	40	1.87
60952--61043	3	30.3	3	86	2	94	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61511--61552	5	8.4	5	80	19	52	80	2	16	0	0.81
61519--61560	18	2.2	20	91	8	70	78	0	21	0	0.75
61511--61560	15	3.4	15	83	10	59	78	2	20	0	0.86
62407--62446	19	2.1	19	85	0	53	50	0	0	50	1.00
62414--62456	23	2.0	20	82	13	50	44	0	0	55	0.99
73820--73871	8	6.6	8	78	12	63	86	0	13	0	0.57
73829--73873	10	4.7	10	91	8	60	86	0	13	0	0.57
73809--73871	23	2.7	23	85	2	81	85	0	11	3	0.70
73820--73871	15	3.3	15	81	10	59	86	0	13	0	0.57
75007--75317	84	3.7	84	92	3	493	27	13	23	35	1.93
76048--76830	113	7.0	113	92	1	1195	36	14	19	29	1.92
76757--76813	17	3.2	17	69	26	55	49	8	24	17	1.75
77060--77130	3	23.3	3	91	2	106	38	0	0	61	0.96
77058--77136	12	6.2	13	77	15	85	39	0	0	60	0.97
80492--80541	14	3.6	14	100	0	100	44	0	6	50	1.26
84745--84865	64	1.9	63	83	5	154	32	22	20	24	1.98
86553--86627	37	2.0	37	82	5	89	38	4	18	38	1.70
91231--91274	21	2.1	21	95	0	79	13	27	9	50	1.72
91617--91649	14	2.4	14	94	0	57	57	18	15	9	1.63
91617--91693	24	3.2	24	75	14	86	55	19	15	9	1.66
91891--91920	14	2.1	14	93	0	51	60	16	13	10	1.59
105214--105280	35	1.9	35	90	0	107	8	22	17	50	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106750--107001	20	12.5	20	76	6	141	39	23	18	18	1.92
106812--107067	61	4.2	60	77	6	248	37	23	19	19	1.94
106812--107064	41	6.2	41	87	3	327	37	23	18	20	1.94
106853--107066	20	10.6	20	78	6	216	36	23	19	20	1.95
107615--107686	20	3.5	20	79	5	74	52	16	16	13	1.74
107630--107693	21	3.1	21	80	6	78	51	14	21	12	1.75
107736--107805	19	3.6	19	82	3	95	14	20	17	48	1.81
108700--108744	23	2.0	23	81	0	54	26	26	24	22	2.00
109046--109117	29	2.5	29	95	0	126	38	11	9	40	1.74
109423--109574	67	2.3	67	90	3	234	16	26	28	28	1.97
115635--115679	23	2.0	23	86	0	63	26	28	24	20	1.99
115981--116052	29	2.5	29	95	0	126	38	11	9	40	1.74
116358--116508	67	2.3	67	91	2	241	16	26	28	28	1.97
118624--118857	94	2.5	95	91	0	380	22	12	18	46	1.82
119323--119389	21	3.2	21	66	6	55	23	35	20	19	1.95
120741--120776	14	2.6	14	95	0	63	33	0	22	44	1.53
120874--120932	19	3.4	19	71	22	65	45	16	22	15	1.84
120874--120954	33	2.4	34	89	2	119	45	19	20	13	1.84
120906--120964	19	3.3	18	75	22	54	44	23	16	15	1.86
120964--121037	32	2.3	33	95	2	132	10	25	20	43	1.84
123567--123621	24	2.3	24	84	6	67	36	16	18	29	1.92
124474--124520	21	2.2	21	92	0	76	36	14	27	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125736--125859	60	2.1	60	81	0	140	36	16	16	30	1.91
132672--132704	12	2.8	12	95	4	59	54	18	15	12	1.71
135043--135094	24	2.2	23	83	10	61	46	1	5	46	1.38
137653--137704	2	26.0	2	100	0	104	50	0	0	50	1.00
138340--138393	22	2.3	24	84	9	67	64	1	5	27	1.26
139500--139630	20	6.4	21	71	9	92	40	17	22	19	1.91
139517--139592	21	3.7	21	76	3	91	40	17	25	17	1.90
139500--139592	41	2.3	41	96	0	177	39	17	24	18	1.91
139519--139653	41	3.3	41	82	6	132	38	19	21	20	1.94
139623--139675	20	2.7	20	90	0	70	28	26	18	26	1.98
139862--139905	22	2.0	22	95	0	79	20	45	15	18	1.85
140128--140171	20	2.2	20	87	0	61	11	18	20	50	1.77
141487--141531	18	2.5	18	88	0	72	26	44	15	13	1.83
142006--142072	20	3.4	20	81	2	73	38	23	22	14	1.92
142076--142120	18	2.4	18	88	3	63	46	26	17	8	1.78
142116--142269	19	8.6	19	75	14	114	12	20	24	42	1.87
142138--142195	14	3.9	14	79	16	71	8	17	25	48	1.75
142121--142211	32	2.8	33	94	3	166	10	18	23	47	1.80
142196--142250	20	2.8	19	89	5	83	16	25	23	34	1.95
144237--144290	14	3.5	14	77	22	63	48	20	20	11	1.80
144218--144295	33	2.4	33	91	0	120	42	21	23	12	1.87
144321--144371	20	2.5	20	93	0	84	19	23	25	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
145431--145484	24	2.2	24	90	0	81	24	16	20	38	1.92
145659--145683	12	2.1	12	100	0	50	72	0	28	0	0.86
147980--148110	19	7.7	19	66	23	94	42	19	22	14	1.88
147980--148106	33	3.8	33	88	4	202	42	19	22	14	1.88
147981--148113	66	2.0	66	97	0	248	41	19	22	16	1.90
148106--148148	20	2.2	20	87	4	61	16	18	23	41	1.89
148134--148167	14	2.4	14	85	0	50	8	23	20	47	1.78
148288--148324	14	2.6	14	91	0	65	45	24	0	29	1.53
150112--150267	31	5.0	31	93	1	260	37	21	19	21	1.95
150445--150491	23	2.0	24	91	4	78	34	21	0	44	1.52
152292--152355	21	3.1	20	71	8	65	18	20	39	21	1.93
152292--152417	42	3.0	41	81	6	119	22	18	37	22	1.94
154422--154600	19	9.8	19	75	13	135	44	21	22	12	1.85
154447--154583	33	4.0	33	83	7	139	41	23	23	11	1.87
154517--154605	19	4.7	19	98	0	169	46	21	21	11	1.82
154422--154605	38	5.1	38	82	9	181	43	21	22	12	1.86
154601--154681	19	4.5	19	74	16	73	11	17	24	46	1.80
155198--155250	20	2.7	20	90	0	79	28	20	26	24	1.99
155259--155312	20	2.7	20	97	0	99	25	18	24	31	1.97
155199--155333	61	2.2	61	80	2	146	23	20	23	32	1.98
164160--164203	16	2.8	16	85	0	52	47	2	2	47	1.27
164150--164185	2	18.0	2	100	0	72	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
175018--175096	33	2.6	31	82	9	92	49	15	13	21	1.79
175018--175079	29	2.1	28	85	5	79	48	14	16	20	1.81
182970--183036	22	3.0	22	84	6	82	26	25	25	22	2.00

Tables:   1

The End!