genome.fa.s2561.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002561.1 Hibiscus syriacus cultivar Beakdansim tig00005198_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  229426

Tables:   1   

This is table  1  of  1  ( 96 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5193--5223	15	2.1	14	94	5	53	51	0	0	48	1.00
12044--12081	20	1.9	20	94	0	67	34	18	21	26	1.96
13633--13693	23	2.7	23	86	0	86	14	26	27	31	1.95
15051--15078	3	9.3	3	100	0	56	64	0	0	35	0.94
20926--20951	2	13.0	2	100	0	52	50	0	0	50	1.00
20957--20999	22	1.9	23	95	4	79	44	0	0	55	0.99
21106--21176	14	5.1	14	77	1	72	53	23	0	22	1.46
21106--21173	28	2.4	28	87	0	100	52	25	0	22	1.47
21413--21459	2	24.0	2	91	4	78	48	0	2	48	1.13
21546--21630	21	4.0	21	81	0	98	54	24	0	21	1.45
21801--21846	23	2.0	24	91	4	76	52	4	0	43	1.21
21899--21926	13	2.2	13	100	0	56	46	0	0	53	1.00
22115--22147	16	2.0	17	88	5	50	45	12	18	24	1.83
24051--24081	6	5.2	6	96	0	53	32	64	3	0	1.09
26727--26790	2	32.5	2	92	3	103	46	0	1	51	1.10
28001--28034	17	2.0	17	94	0	59	29	2	0	67	1.05
28379--28429	19	2.5	20	78	15	52	5	3	11	78	1.06
28455--28486	16	1.9	17	93	6	57	15	12	9	62	1.54
38033--38109	20	3.8	21	86	6	97	18	27	36	18	1.94
38033--38109	19	3.8	20	85	10	95	18	27	36	18	1.94
38033--38109	41	1.9	40	84	7	102	18	27	36	18	1.94
38460--38522	24	2.6	24	100	0	126	23	42	0	33	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48384--48462	40	2.0	41	92	2	133	17	29	35	17	1.93
48385--48462	20	3.8	20	83	8	104	16	29	35	17	1.93
51351--51709	106	3.5	105	84	6	480	34	25	18	22	1.96
52472--52509	2	19.0	2	94	0	67	47	0	0	52	1.00
53727--53762	15	2.4	15	90	0	54	22	2	2	72	1.11
64155--64198	20	2.1	21	95	4	81	38	0	9	52	1.33
71529--71561	17	1.9	17	100	0	66	60	9	12	18	1.57
71528--71566	17	2.4	16	88	12	62	61	7	12	17	1.54
92847--93076	64	3.6	64	80	2	228	27	17	25	29	1.98
92975--93025	19	2.7	19	85	8	70	25	15	35	23	1.94
92868--93027	65	2.5	64	86	1	212	28	16	25	30	1.97
92869--93076	65	3.2	63	80	13	210	27	17	25	29	1.97
99490--99529	21	1.9	21	85	10	55	35	10	2	52	1.48
101456--101636	64	2.8	63	83	3	218	27	17	26	29	1.97
101584--101634	19	2.7	19	85	8	70	25	15	35	23	1.94
101478--101685	65	3.2	64	80	13	221	27	16	25	30	1.97
103188--103245	23	2.5	23	91	0	89	20	29	22	27	1.99
105484--105559	21	3.6	21	84	10	102	32	28	19	18	1.96
105571--105623	21	2.5	21	87	0	79	20	20	28	30	1.98
111233--111453	64	3.5	64	82	7	202	34	20	19	25	1.96
112319--112405	23	3.8	23	90	0	138	20	27	25	26	1.99
115098--115139	20	2.1	20	86	0	57	35	21	11	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116982--117021	13	3.0	13	81	3	53	62	0	25	12	1.30
124568--124610	20	2.2	20	82	0	50	32	20	16	30	1.95
135005--135043	17	2.2	17	86	4	51	35	0	2	61	1.10
135614--135653	2	20.0	2	100	0	80	50	0	0	50	1.00
138894--138938	21	2.1	21	87	0	63	35	0	22	42	1.54
147027--147061	13	2.7	13	95	0	61	20	22	17	40	1.92
147084--147144	31	2.0	31	86	0	86	26	18	14	40	1.89
149326--149353	2	14.0	2	100	0	56	50	0	0	50	1.00
152167--152213	15	3.1	15	81	6	58	25	17	4	53	1.62
155711--155737	13	2.1	13	100	0	54	22	25	14	37	1.93
156423--156451	15	2.0	15	93	6	51	55	3	0	41	1.17
173228--173393	37	4.4	38	73	19	134	45	4	6	44	1.47
173228--173393	36	4.4	38	76	12	148	45	4	6	44	1.47
173345--173444	26	3.7	27	69	16	73	46	4	6	44	1.47
173380--173409	15	1.9	16	93	6	53	40	0	6	53	1.27
173267--173520	126	2.0	128	90	4	399	44	4	7	44	1.52
173395--173587	36	5.1	37	75	13	151	43	4	7	45	1.52
173493--173577	42	2.0	42	88	4	127	42	3	3	50	1.36
173597--173646	16	3.1	17	77	5	50	26	2	0	72	0.96
175008--175038	13	2.4	13	100	0	62	22	0	0	77	0.77
174990--175046	20	2.9	20	92	2	89	21	0	1	77	0.86
176816--176860	19	2.4	19	92	3	74	11	13	8	66	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
180247--180840	165	3.6	165	93	1	976	29	25	21	23	1.99
180219--180921	329	2.1	327	85	3	946	30	24	21	23	1.99
181456--181619	37	4.4	36	77	12	147	45	4	6	44	1.48
181571--181670	26	3.7	27	69	16	73	46	4	6	44	1.47
181469--181619	35	4.2	34	72	17	110	45	3	5	44	1.46
181606--181635	15	1.9	16	93	6	53	40	0	6	53	1.27
181493--181746	126	2.0	128	90	4	399	44	4	7	44	1.52
181621--181813	42	5.1	37	75	13	151	43	4	7	44	1.52
183231--183261	13	2.4	13	100	0	62	22	0	0	77	0.77
183213--183269	20	2.9	20	92	2	89	21	0	1	77	0.86
183260--183303	21	2.1	21	83	8	54	6	13	6	72	1.25
188404--188436	10	3.3	10	100	0	66	54	9	0	36	1.32
196611--196655	21	2.1	21	91	0	72	33	28	22	15	1.95
197903--197943	13	3.5	13	75	25	54	21	26	26	24	2.00
197890--197977	43	2.0	44	93	2	151	21	27	26	25	1.99
197890--197977	22	4.0	22	95	2	151	21	27	26	25	1.99
201209--201253	21	2.1	21	87	0	63	31	28	24	15	1.96
202504--202566	13	5.5	13	68	27	61	20	26	26	25	1.99
202491--202579	22	4.0	22	98	0	160	21	26	26	24	1.99
205300--205363	23	2.7	23	82	7	74	50	1	1	46	1.20
205292--205487	50	3.9	49	75	15	161	47	1	1	49	1.20
205433--205472	20	2.0	20	85	0	53	47	2	0	50	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
205445--205508	27	2.3	28	82	12	71	51	0	1	46	1.10
205396--205508	51	2.3	50	78	7	124	49	0	1	47	1.17
205604--205646	14	3.1	14	82	0	50	44	0	2	53	1.13
205658--205705	22	2.1	24	88	7	73	52	0	4	43	1.20
205662--205714	22	2.4	21	82	14	63	49	0	1	49	1.12
208530--208567	19	2.0	19	100	0	76	36	15	10	36	1.82
215927--215994	23	3.0	23	79	10	77	17	11	10	60	1.58
225464--225494	15	2.1	15	93	0	53	29	29	16	25	1.96

Tables:   1

The End!