genome.fa.s2564.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002564.1 Hibiscus syriacus cultivar Beakdansim tig00005203_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75994

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8256--8297	20	2.1	20	86	0	57	30	21	14	33	1.93
11107--11329	107	2.1	107	95	2	403	30	13	17	37	1.89
12085--12142	20	2.9	20	70	14	57	41	15	8	34	1.78
12616--12652	19	1.9	19	94	0	65	32	18	18	29	1.96
13695--13878	36	5.1	36	93	0	296	33	22	25	19	1.97
13939--13975	19	1.9	19	94	0	65	32	18	18	29	1.96
16133--16180	17	2.8	17	75	12	53	39	0	0	60	0.97
17809--17853	2	22.5	2	100	0	90	48	0	0	51	1.00
22505--22548	17	2.5	17	81	3	52	38	0	0	61	0.96
22676--22729	25	2.2	25	86	6	74	42	3	5	48	1.44
24907--24941	16	2.1	17	94	5	63	31	8	25	34	1.86
25691--25723	15	2.1	16	88	5	50	51	15	24	9	1.72
29989--30044	20	2.7	21	83	2	60	33	23	19	23	1.97
30044--30125	44	1.9	41	85	7	110	31	4	29	34	1.79
30046--30136	19	4.4	20	74	17	96	35	4	28	31	1.77
30426--30467	6	7.0	6	97	0	75	0	16	52	30	1.44
36982--37022	21	2.0	21	100	0	82	43	12	19	24	1.85
41627--41667	21	2.0	21	100	0	82	43	12	19	24	1.85
46359--46401	20	2.2	20	100	0	86	37	23	4	34	1.76
51679--51750	23	3.2	23	73	11	69	22	33	19	25	1.97
71009--71037	14	2.1	14	93	6	51	27	6	0	65	1.18
72810--73162	144	2.5	144	78	4	354	22	24	20	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72908--73211	144	2.1	146	85	3	411	22	24	23	29	1.99
73694--73944	111	2.3	111	88	5	359	29	17	23	29	1.97
73833--74651	134	6.2	134	88	4	1153	29	17	22	30	1.97
73833--74651	263	3.1	263	88	3	1141	29	17	22	30	1.97
73833--74654	397	2.1	395	87	4	1192	29	18	22	30	1.97
74961--75011	20	2.5	20	83	6	57	31	23	15	29	1.95
74812--75170	180	2.0	175	86	5	488	30	19	15	34	1.93
74991--75768	213	3.7	206	85	6	979	32	18	15	33	1.92
75764--75963	36	5.9	36	79	14	201	21	20	24	34	1.97
75764--75963	65	2.9	67	83	10	228	21	20	24	34	1.97
75788--75963	33	5.2	33	82	12	112	21	19	25	32	1.97

Tables:   1

The End!