Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002567.1 Hibiscus syriacus cultivar Beakdansim tig00005210_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  322000

Tables:   1   2   

This is table  2  of  2  ( 171 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
255500--255567
33
2.1
33
94
0
118
26
2
20
50
1.63
255500--255558
18
3.4
18
77
13
79
23
3
22
50
1.63
255503--255561
16
3.6
16
73
13
66
25
3
20
50
1.63
261435--261503
15
4.3
16
75
10
61
18
27
31
21
1.97
261447--261503
15
3.7
15
77
9
69
17
28
33
21
1.96
261435--261503
32
2.2
32
91
0
111
18
27
31
21
1.97
262789--262852
21
3.0
21
93
2
101
25
31
23
20
1.98
264802--264837
18
2.0
18
88
0
54
22
25
0
52
1.47
267221--267271
2
25.5
2
100
0
102
49
0
0
50
1.00
268937--268989
21
2.7
20
83
13
65
45
9
16
28
1.79
269053--269097
21
2.1
22
87
4
65
26
26
24
22
2.00
270760--270799
21
2.0
20
85
14
55
25
32
30
12
1.92
273440--273469
10
3.0
10
95
0
51
53
0
0
46
1.00
275305--275339
16
2.1
18
89
10
56
65
0
8
25
1.21
275453--275491
2
19.5
2
94
0
69
53
0
0
46
1.00
275477--275571
34
2.9
34
79
4
95
61
6
3
29
1.36
275915--276014
35
2.8
36
84
6
121
32
15
15
38
1.88
276478--277837
210
6.5
205
83
7
1423
21
19
25
33
1.97
276475--277837
105
13.0
105
81
7
1189
21
19
25
33
1.97
278541--278923
36
10.9
36
75
11
312
40
12
19
27
1.88
278553--278637
37
2.3
36
87
2
116
42
17
17
22
1.89
278575--278758
102
1.8
101
84
1
251
41
11
17
28
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
278482--278795
138
2.3
138
82
5
364
41
11
19
27
1.86
278541--278923
174
2.2
174
85
1
507
40
12
19
27
1.88
278541--278973
36
12.4
35
71
17
144
39
12
19
27
1.88
279405--279440
18
2.0
18
94
0
63
41
33
8
16
1.78
279856--279904
22
2.2
22
92
0
80
28
14
24
32
1.94
279868--279911
22
2.0
22
86
0
61
31
13
22
31
1.93
280530--280597
23
3.0
22
77
14
66
2
17
7
72
1.21
280569--280630
8
8.0
7
81
15
61
0
16
6
77
0.97
280540--280630
16
5.9
14
75
19
65
2
15
6
75
1.10
280540--280630
15
5.8
16
75
12
64
2
15
6
75
1.10
280588--280636
16
3.1
16
86
11
66
0
14
6
79
0.91
281825--281863
8
5.0
8
84
6
53
58
12
17
10
1.61
281825--281863
15
2.5
15
87
4
51
58
12
17
10
1.61
282383--282422
18
2.2
18
100
0
80
35
12
32
20
1.90
284529--284563
16
2.1
18
89
10
56
65
0
8
25
1.21
284593--284667
2
37.5
2
100
0
150
50
0
0
49
1.00
284740--284830
32
2.9
31
80
7
87
61
4
4
29
1.35
285185--285276
35
2.6
37
85
5
118
31
14
16
38
1.88
297268--297357
19
4.7
19
98
0
171
32
35
15
16
1.91
297204--297421
121
1.8
121
86
2
321
31
28
16
24
1.96
299536--299566
15
2.1
15
93
0
53
22
6
6
64
1.40
300390--300486
44
2.2
44
83
7
117
26
23
19
29
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
301971--302131
64
2.5
64
89
0
241
31
22
16
29
1.96
301971--302149
64
2.8
63
85
3
232
30
23
17
29
1.97
304052--304119
30
2.3
30
82
10
86
22
27
11
38
1.89
308377--308405
2
14.5
2
100
0
58
51
0
0
48
1.00
312263--312299
16
2.3
16
100
0
74
29
13
24
32
1.93
314739--314773
5
7.0
5
93
0
61
20
20
22
37
1.95
320538--320608
24
3.0
24
76
10
65
49
9
2
38
1.51

Tables:   1   2

The End!