genome.fa.s2567.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002567.1 Hibiscus syriacus cultivar Beakdansim tig00005210_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  322000

Tables:   1   2   

This is table  1  of  2  ( 171 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1170--1229	20	3.0	21	90	7	97	30	10	36	23	1.87
6695--6732	19	2.0	19	100	0	76	57	10	21	10	1.61
12890--12948	27	2.1	28	81	9	68	59	0	3	37	1.14
17327--17372	22	2.2	19	85	14	56	52	2	4	41	1.33
18831--18878	21	2.2	22	85	3	62	33	2	2	62	1.18
19474--19518	21	2.1	21	100	0	90	17	24	22	35	1.95
23684--23713	6	5.0	6	100	0	60	50	33	16	0	1.46
24182--24215	13	2.4	14	90	9	52	61	0	0	38	0.96
54514--56423	954	2.0	955	99	0	3795	37	19	15	27	1.92
59383--59411	2	14.5	2	100	0	58	48	0	0	51	1.00
63075--63155	15	4.9	15	68	19	54	66	2	2	28	1.17
63062--63118	27	2.0	29	87	12	84	64	0	5	29	1.15
66547--66617	24	3.4	20	76	16	72	29	16	25	28	1.97
67492--67608	2	58.5	2	98	0	225	0	0	48	50	1.06
68843--68882	21	1.9	21	89	0	62	42	10	20	27	1.83
70862--71086	64	3.5	64	80	7	219	32	21	20	26	1.97
77885--78109	64	3.5	64	80	6	208	31	21	20	27	1.98
78419--78454	12	3.0	12	87	0	54	30	8	25	36	1.85
78599--78661	15	4.2	15	95	0	108	15	23	31	28	1.96
79494--79621	64	2.0	67	87	7	192	27	18	19	34	1.95
79506--79666	64	2.5	63	81	5	171	27	20	18	34	1.95
85446--85484	20	1.9	21	84	5	53	23	25	12	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88320--88447	64	2.0	67	87	7	192	27	18	18	35	1.95
88332--88492	64	2.5	62	81	10	173	27	20	17	34	1.95
93799--93851	2	26.5	2	81	14	56	41	0	7	50	1.30
93797--93851	20	2.8	20	88	0	92	41	0	7	50	1.30
96845--96954	56	2.0	56	96	0	202	48	20	10	20	1.79
97326--97421	47	2.0	47	100	0	192	29	23	17	29	1.97
101864--101976	56	2.0	56	98	0	217	46	21	11	20	1.81
106240--106299	11	5.5	11	84	4	77	46	0	1	51	1.10
106239--106299	21	2.8	22	82	5	79	47	0	1	50	1.10
106238--106322	32	2.7	31	87	1	107	45	1	2	50	1.22
106291--106329	21	1.9	20	84	5	51	38	7	2	51	1.44
106721--106759	16	2.4	16	95	0	69	12	35	5	46	1.65
107373--107418	16	2.7	17	83	10	58	54	2	0	43	1.12
107335--107458	39	3.2	39	70	22	98	46	2	0	50	1.20
107414--107478	28	2.3	29	81	7	71	47	3	1	47	1.27
107334--107502	78	2.2	79	78	13	181	47	2	1	49	1.22
107477--107531	23	2.5	22	81	3	74	52	0	0	47	1.00
107477--107539	21	2.8	22	81	9	74	52	0	0	47	1.00
107477--107544	23	3.0	23	78	20	72	50	0	0	50	1.00
116072--116208	21	6.6	21	86	8	190	31	25	20	22	1.98
116155--116227	20	3.6	20	80	10	94	36	19	20	23	1.95
116092--116227	41	3.3	41	90	5	195	33	22	19	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116072--116227	62	2.5	62	83	8	167	32	24	19	23	1.98
116217--116270	21	2.6	21	90	0	81	24	20	25	29	1.99
116293--116475	93	2.0	93	100	0	366	28	17	22	31	1.97
117105--117207	21	4.9	21	86	6	129	30	23	22	24	1.99
117242--117402	21	7.7	21	80	9	177	23	19	24	31	1.98
117241--117402	42	3.9	42	79	8	195	23	20	24	31	1.98
117266--117382	62	1.9	62	87	3	173	22	20	23	34	1.97
120675--120741	2	33.5	2	100	0	134	49	0	0	50	1.00
121313--121356	20	2.2	20	91	0	70	22	0	2	75	0.92
121311--121350	12	3.1	13	85	10	55	25	0	2	72	0.97
121345--121428	32	2.9	30	79	10	77	38	0	2	59	1.10
134559--134617	29	2.0	29	93	6	102	49	13	13	23	1.78
146290--146348	29	2.0	29	100	0	118	49	13	13	23	1.78
146957--147015	30	1.9	31	93	3	102	38	15	16	28	1.89
147345--147401	17	3.4	17	76	11	55	47	0	7	45	1.30
148388--148440	21	2.5	21	93	0	97	9	30	37	22	1.86
149673--149711	20	2.0	20	89	0	60	15	10	30	43	1.80
149678--149719	20	2.1	20	86	0	57	11	11	30	45	1.77
159873--159948	29	2.6	29	80	0	80	25	9	23	42	1.83
166724--166765	19	2.2	19	86	0	57	11	19	28	40	1.87
166791--166838	18	2.7	18	93	0	78	18	43	22	14	1.87
171138--171177	20	2.0	21	85	14	57	37	17	17	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
171212--171251	21	1.9	21	85	10	55	25	25	20	30	1.99
174643--175193	275	2.0	275	99	0	1084	33	19	11	35	1.88
181113--181159	20	2.3	20	85	10	60	40	21	8	29	1.83
181175--181238	20	3.2	20	82	6	69	31	18	10	39	1.86
184793--184854	30	2.0	32	84	6	83	19	14	4	61	1.51
186010--186063	18	3.1	18	74	15	51	29	5	1	62	1.28
188874--188927	20	2.7	19	75	8	63	33	31	18	16	1.93
188914--189031	20	5.8	20	72	14	80	37	22	18	22	1.94
188977--189211	20	11.6	20	77	7	197	37	24	18	19	1.94
188977--189208	81	2.9	80	80	5	236	37	24	18	19	1.94
189042--189208	40	4.1	41	92	1	266	37	24	19	19	1.94
189768--189876	20	5.8	20	73	17	85	51	18	19	11	1.75
189823--189892	33	2.1	33	91	0	113	50	18	21	10	1.76
189829--189903	33	2.3	33	88	0	105	49	22	18	9	1.76
189899--189977	39	2.1	39	82	2	97	13	20	18	46	1.83
189899--189977	19	4.1	19	80	3	95	13	20	18	46	1.83
191672--192033	94	3.9	94	95	0	618	21	12	17	47	1.81
193824--193917	33	2.8	33	93	0	161	45	17	22	14	1.84
193832--193922	19	5.3	18	65	23	63	47	17	23	12	1.81
193928--194085	19	8.7	19	68	15	111	14	20	18	45	1.85
193933--194025	33	2.8	33	93	0	150	12	20	19	47	1.82
194019--194065	20	2.3	20	88	0	67	19	19	21	40	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
193966--194065	33	2.7	39	82	10	104	16	19	20	45	1.86
196563--196616	24	2.2	24	93	0	90	40	20	18	20	1.91
196563--196630	24	2.8	24	84	0	64	38	20	17	23	1.93
197476--197827	20	17.5	19	78	9	231	20	17	21	40	1.92
197473--197827	40	8.8	40	81	7	290	20	18	21	40	1.91
197476--197827	60	5.8	60	78	7	277	20	17	21	40	1.92
197616--197827	81	2.6	81	81	8	243	18	17	24	39	1.92
198962--198994	2	16.5	2	100	0	66	51	0	0	48	1.00
203805--203839	4	8.8	4	100	0	70	51	22	0	25	1.48
203869--203906	19	2.0	20	89	5	60	23	5	21	50	1.69
208395--208432	19	2.0	20	89	5	60	23	5	21	50	1.69
208538--208563	2	13.0	2	100	0	52	50	0	0	50	1.00
208981--209014	12	2.8	12	100	0	68	41	8	14	35	1.77
217548--217646	52	1.9	52	87	4	146	38	16	14	31	1.88
219905--220215	159	2.0	159	94	0	550	37	21	18	21	1.94
231446--231477	12	2.7	12	95	0	55	25	21	15	37	1.93
236426--236648	112	2.0	113	91	2	360	34	9	11	44	1.73
236665--236871	87	2.4	87	94	1	353	30	14	12	42	1.81
237192--237787	113	5.3	113	89	3	875	33	11	12	43	1.77
237192--237787	225	2.7	223	89	2	901	33	11	12	43	1.77
238040--238216	87	2.0	87	92	2	293	32	12	9	44	1.75
238550--239011	112	4.1	113	89	0	703	33	11	11	43	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
239267--239316	23	2.2	23	92	0	82	32	18	12	38	1.87
239344--239394	23	2.2	23	89	0	75	37	19	5	37	1.76
239251--239457	87	2.4	87	94	0	360	31	15	10	42	1.80
239774--240070	111	2.7	113	88	3	449	33	13	11	41	1.80
240349--240398	23	2.2	23	88	0	73	32	16	12	40	1.84
240333--240592	88	3.0	87	87	1	394	31	12	11	44	1.78
244186--244213	14	2.0	14	100	0	56	21	14	14	50	1.78
250496--250536	18	2.4	17	84	11	57	29	26	12	31	1.92
250854--250897	22	2.0	22	100	0	88	40	13	9	36	1.76
252637--252682	24	2.0	23	91	8	76	47	13	8	30	1.72

Tables:   1   2